C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PRP31 pre-mRNA processing factor 31 homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008517 Prpf31-001 ENSMUSG00000008373 10090 + 7:3629985-3642486 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000008517
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008517 2.179±0.46 2.105±0.32 3.641±0.26 4.183±1.76 1.685±0.79 2.800±0.86 0.864±0.06 1.337±0.41 4.849±5.29 2.108±1.11 0.898±0.23 4.984±1.46 4.823±2.07 3.614±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O3 CIL_0005O3_0002 CGP 7:3620324-3642486
CIL_0005OD CIL_0005OD_0002 CGP 7:3629985-3661108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000244 ISA spliceosomal tri-snRNP complex assembly
GO:0000398 ISA mRNA splicing, via spliceosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005687 IEA U4 snRNP
GO:0015030 ISA Cajal body
GO:0016607 ISA nuclear speck
GO:0043021 ISA ribonucleoprotein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0046540 ISA U4/U6 x U5 tri-snRNP complex
GO:0070990 IEA snRNP binding
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321030 PRPF31-001 protein_coding Homo_sapiens 0 1919
ENST00000391755 PRPF31-003 protein_coding Homo_sapiens 0 1807
ENST00000419967 PRPF31-201 protein_coding Homo_sapiens 0 1663
ENST00000445124 PRPF31-006 protein_coding Homo_sapiens 0 1077
ENST00000445811 PRPF31-005 protein_coding Homo_sapiens 0 1107
ENST00000447810 PRPF31-009 protein_coding Homo_sapiens 0 1029
ENST00000466404 PRPF31-004 retained_intron Homo_sapiens 0 1210
ENST00000467851 PRPF31-010 retained_intron Homo_sapiens 8e-34 147
ENST00000498612 PRPF31-008 processed_transcript Homo_sapiens 0 808
ENST00000610903 PRPF31-213 protein_coding Homo_sapiens 0 1919
ENST00000611565 PRPF31-008 processed_transcript Homo_sapiens 0 808
ENST00000612749 PRPF31-211 protein_coding Homo_sapiens 0 1663
ENST00000613020 PRPF31-006 protein_coding Homo_sapiens 0 1077
ENST00000613693 PRPF31-001 protein_coding Homo_sapiens 0 1919
ENST00000614518 PRPF31-204 protein_coding Homo_sapiens 0 1663
ENST00000615175 PRPF31-202 protein_coding Homo_sapiens 0 1663
ENST00000616532 PRPF31-003 protein_coding Homo_sapiens 0 1807
ENST00000616732 PRPF31-212 protein_coding Homo_sapiens 0 1919
ENST00000618333 PRPF31-005 protein_coding Homo_sapiens 0 1107
ENST00000618558 PRPF31-010 retained_intron Homo_sapiens 8e-34 147
ENST00000618595 PRPF31-206 protein_coding Homo_sapiens 0 1663
ENST00000618937 PRPF31-205 protein_coding Homo_sapiens 0 1919
ENST00000619220 PRPF31-217 protein_coding Homo_sapiens 0 1663
ENST00000619391 PRPF31-210 protein_coding Homo_sapiens 0 1663
ENST00000619439 PRPF31-207 protein_coding Homo_sapiens 0 1919
ENST00000619956 PRPF31-208 protein_coding Homo_sapiens 0 1919
ENST00000620142 PRPF31-203 protein_coding Homo_sapiens 0 1919
ENST00000620861 PRPF31-215 protein_coding Homo_sapiens 0 1919
ENST00000621578 PRPF31-004 retained_intron Homo_sapiens 0 1210
ENST00000621588 PRPF31-214 protein_coding Homo_sapiens 0 1663
ENST00000622164 PRPF31-009 protein_coding Homo_sapiens 0 1029
ENST00000622300 PRPF31-218 protein_coding Homo_sapiens 0 1919
ENST00000622387 PRPF31-209 protein_coding Homo_sapiens 0 1663
ENST00000622636 PRPF31-216 protein_coding Homo_sapiens 0 1663

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