C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005OD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105618-ENSG00000088038 CGP 9606 19:54115410-54155681
GeneTranscriptPositionBiotype
ENSG00000088038 (CNOT3)
CCR4-NOT transcription complex, subunit 3 		ENST00000221232 (CNOT3-001) 54137728-54155681 protein_coding
ENST00000358389 (CNOT3-003) 54141396-54155680 protein_coding
ENST00000440571 (CNOT3-009) 54143730-54148697 protein_coding
ENST00000447684 (CNOT3-201) 54144005-54155680 protein_coding
ENST00000457463 (CNOT3-006) 54149560-54154455 protein_coding
ENST00000471126 (CNOT3-011) 54153724-54155681 protein_coding
ENST00000496327 (CNOT3-010) 54149730-54153819 processed_transcript
ENST00000613073 (CNOT3-005) 54143737-54155681 nonsense_mediated_decay
ENST00000617930 (CNOT3-007) 54153003-54155681 retained_intron
ENST00000618939 (CNOT3-002) 54137787-54155680 retained_intron
ENSG00000105617 (LENG1)
leukocyte receptor cluster (LRC) member 1 		ENST00000222224 (LENG1-001) 54155161-54159882 protein_coding
ENSG00000105618 (PRPF31)
pre-mRNA processing factor 31 		ENST00000321030 (PRPF31-001) 54115457-54131709 protein_coding
ENST00000391755 (PRPF31-003) 54118271-54131709 protein_coding
ENST00000419967 (PRPF31-201) 54115410-54131719 protein_coding
ENST00000445124 (PRPF31-006) 54115779-54124630 protein_coding
ENST00000445811 (PRPF31-005) 54115754-54124654 protein_coding
ENST00000447810 (PRPF31-009) 54115809-54124583 protein_coding
ENST00000466404 (PRPF31-004) 54118409-54131709 retained_intron
ENST00000467851 (PRPF31-010) 54118406-54118811 retained_intron
ENST00000498612 (PRPF31-008) 54118613-54128197 processed_transcript
ENSG00000237017 (AC012314.8)
 ENST00000452097 (AC012314.8-001) 54119511-54125343 antisense
CIL_0005OD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008373-ENSMUSG00000035632 CGP 10090 7:3629985-3661108
GeneTranscriptPositionBiotype
ENSMUSG00000008373 (Prpf31)
PRP31 pre-mRNA processing factor 31 homolog (yeast) 		ENSMUST00000008517 (Prpf31-001) 3629985-3642486 protein_coding
ENSMUST00000108636 (Prpf31-004) 3630557-3641229 protein_coding
ENSMUST00000125782 (Prpf31-003) 3630059-3637057 retained_intron
ENSMUST00000134047 (Prpf31-005) 3636095-3637057 retained_intron
ENSMUST00000143231 (Prpf31-002) 3629992-3631421 retained_intron
ENSMUST00000179769 (Prpf31-201) 3629985-3642485 protein_coding
ENSMUSG00000035632 (Cnot3)
CCR4-NOT transcription complex, subunit 3 		ENSMUST00000038913 (Cnot3-002) 3645352-3661100 protein_coding
ENSMUST00000129973 (Cnot3-005) 3658172-3661100 retained_intron
ENSMUST00000132344 (Cnot3-006) 3651309-3655827 protein_coding
ENSMUST00000135977 (Cnot3-003) 3651808-3658741 nonsense_mediated_decay
ENSMUST00000143085 (Cnot3-001) 3645290-3661108 retained_intron
ENSMUST00000144097 (Cnot3-004) 3658745-3661100 retained_intron
ENSMUST00000160200 (Cnot3-007) 3659390-3661100 protein_coding
ENSMUSG00000078813 (Leng1)
leukocyte receptor cluster (LRC) member 1 		ENSMUST00000019878 (Leng1-001) 3660098-3665840 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005OD_0001ENSG00000088038ENST00000221232ENST00000358389ENST00000440571ENST00000447684ENST00000457463ENST00000471126ENST00000496327ENST00000613073ENST00000617930ENST00000618939ENSG00000105617ENST00000222224ENSG00000105618ENST00000321030ENST00000391755ENST00000419967ENST00000445124ENST00000445811ENST00000447810ENST00000466404ENST00000467851ENST00000498612ENSG00000237017ENST00000452097CIL_0005OD_0002ENSMUSG00000008373ENSMUST00000008517ENSMUST00000108636ENSMUST00000125782ENSMUST00000134047ENSMUST00000143231ENSMUST00000179769ENSMUSG00000035632ENSMUST00000038913ENSMUST00000129973ENSMUST00000132344ENSMUST00000135977ENSMUST00000143085ENSMUST00000144097ENSMUST00000160200ENSMUSG00000078813ENSMUST00000019878
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005OD_0001ENSG00000088038ENST00000221232ENST00000358389ENST00000440571ENST00000617930ENST00000618939ENSG00000105617ENST00000222224ENSG00000105618ENST00000321030ENST00000391755ENST00000419967ENST00000445124ENST00000498612ENSG00000237017ENST00000452097CIL_0005OD_0002ENSMUSG00000008373ENSMUST00000008517ENSMUST00000108636ENSMUST00000134047ENSMUST00000143231ENSMUSG00000035632ENSMUST00000038913ENSMUST00000129973ENSMUST00000132344ENSMUST00000135977ENSMUST00000143085ENSMUSG00000078813ENSMUST00000019878
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088038 ENST00000221232 9.542±0.00 11.352±0.00 1.375±0.00 3.396±2.29 4.462±3.37 4.311±3.13 4.552±0.00 6.313±5.42 2.884±0.99 4.148±3.58 9.147±0.00 16.209±9.16 13.984±2.57 34.730±19.74
ENST00000358389 N/A N/A 0.839±0.00 0.643±0.00 0.709±0.00 0.382±0.00 N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A
ENST00000440571 5.660±0.00 N/A N/A 4.785±0.00 N/A N/A N/A N/A N/A 10.237±0.00 2.459±0.00 N/A N/A N/A
ENST00000447684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617930 N/A N/A N/A N/A 1.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618939 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00 N/A N/A N/A N/A
ENSG00000105617 ENST00000222224 6.544±0.00 18.878±0.00 0.660±0.00 3.378±2.82 5.715±4.86 6.912±6.04 2.501±1.79 11.844±0.00 2.904±1.76 5.618±4.97 9.814±0.00 20.362±0.47 11.286±2.15 18.923±1.92
ENSG00000105618 ENST00000321030 7.768±0.00 N/A 2.426±0.00 9.719±4.49 4.901±0.00 4.077±0.00 0.852±0.00 5.650±0.00 6.844±0.00 1.148±0.00 N/A 8.919±3.88 16.784±3.31 N/A
ENST00000391755 19.904±0.00 37.081±0.00 N/A 21.225±0.00 13.804±10.44 20.998±0.00 7.551±6.61 13.068±11.00 15.972±0.00 9.786±8.30 10.283±0.00 26.247±10.90 24.664±3.01 24.034±0.00
ENST00000419967 N/A 14.634±0.00 N/A 2.471±0.00 N/A 7.519±5.25 0.630±0.00 N/A N/A 1.719±0.00 7.988±0.00 N/A N/A 10.795±1.17
ENST00000445124 N/A N/A N/A N/A N/A N/A N/A N/A 3.815±0.00 N/A N/A N/A N/A N/A
ENST00000445811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.159±0.00
ENSG00000237017 ENST00000452097 3.700±0.00 N/A N/A N/A 5.053±0.00 N/A N/A 5.348±0.00 N/A N/A N/A 4.845±0.00 N/A 5.492±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008373 ENSMUST00000008517 2.179±0.46 2.105±0.32 3.641±0.26 4.183±1.76 1.685±0.79 2.800±0.86 0.864±0.06 1.337±0.41 4.849±5.29 2.108±1.11 0.898±0.23 4.984±1.46 4.823±2.07 3.614±0.67
ENSMUST00000108636 7.808±1.71 10.170±4.02 8.308±0.64 7.732±0.25 6.351±1.97 6.008±1.88 2.875±1.06 4.824±1.25 10.286±9.80 5.651±1.65 4.744±0.54 12.901±3.03 21.045±9.52 6.126±1.03
ENSMUST00000125782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134047 N/A 14.547±5.45 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143231 N/A N/A 7.796±0.52 7.442±0.14 3.109±0.00 N/A 4.792±0.43 N/A N/A N/A 4.209±0.68 6.685±0.39 N/A 2.449±0.00
ENSMUST00000179769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035632 ENSMUST00000038913 6.700±1.37 N/A 10.360±0.00 11.529±2.29 6.149±1.68 N/A 1.431±0.38 4.457±0.73 8.678±6.24 7.311±1.24 3.066±0.72 15.218±10.05 28.751±15.28 5.315±1.75
ENSMUST00000129973 N/A 9.074±1.81 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132344 N/A N/A N/A 15.671±0.00 N/A N/A N/A N/A N/A N/A N/A 46.679±0.00 47.631±0.00 9.414±0.00
ENSMUST00000135977 4.573±1.82 8.775±0.94 N/A 5.282±0.00 6.878±1.64 N/A 2.323±0.11 4.091±0.00 3.556±0.96 7.462±0.00 N/A 7.624±1.85 N/A 2.826±0.32
ENSMUST00000143085 N/A 3.561±0.49 N/A 3.324±0.00 N/A N/A N/A N/A 1.746±0.54 N/A 2.091±0.67 N/A N/A 1.920±0.00
ENSMUST00000144097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078813 ENSMUST00000019878 8.179±1.93 9.022±0.65 16.590±3.75 7.313±1.25 8.623±0.60 N/A 5.008±1.31 9.183±1.74 6.371±2.13 N/A 3.706±0.35 14.693±4.72 18.055±6.49 5.906±0.50

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