C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009575 Cbx5 10090 - 15:103191544-103239816 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000108813 Cbx5-002 103196687-103215352 protein_coding
  ENSMUST00000118152 Cbx5-001 103191544-103239816 protein_coding
  ENSMUST00000122182 Cbx5-003 103199255-103215305 protein_coding
  ENSMUST00000127191 Cbx5-004 103213082-103215366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118152ENSMUST00000122182
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118152 11.101±4.33 5.926±1.85 5.538±0.32 28.739±14.59 6.623±2.24 3.945±1.12 8.340±1.26 9.454±1.68 18.763±19.09 13.871±0.97 4.191±0.29 14.082±3.10 13.027±7.60 4.661±2.14
ENSMUST00000122182 N/A N/A N/A 32.173±0.00 N/A N/A N/A N/A N/A N/A N/A 22.232±0.00 18.967±11.32 8.835±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00003L CIL_00003L_0002 CGP 15:103153307-103239816
CIL_0002TM CIL_0002TM_0003 CGP 15:103191544-103244955

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000776 IDA kinetochore
GO:0000792 IDA heterochromatin
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005720 IDA nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0010369 IDA chromocenter
GO:0016605 IEA PML body
GO:0017053 IDA transcriptional repressor complex
GO:0030674 IPI protein binding, bridging
GO:0035064 ISS methylated histone binding
GO:0035097 IDA histone methyltransferase complex
GO:0042803 IPI protein homodimerization activity
GO:0042826 IPI histone deacetylase binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070491 IPI repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061187 cbx5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) protein_coding Danio_rerio
ENSG00000094916 CBX5 chromobox homolog 5 protein_coding Homo_sapiens

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