C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox homolog 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000094916 CBX5 9606 - 12:54230940-54280133 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000209875 CBX5-002 54230940-54280102 protein_coding
  ENST00000439541 CBX5-004 54240625-54259592 protein_coding
  ENST00000547872 CBX5-006 54241747-54252525 retained_intron
  ENST00000550411 CBX5-003 54241755-54259545 protein_coding
  ENST00000552562 CBX5-005 54252091-54258427 protein_coding
  ENST00000618078 CBX5-007 54271841-54280133 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000209875ENST00000439541ENST00000550411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000209875 6.182±0.00 5.752±0.00 6.394±0.00 12.372±1.52 5.394±1.40 5.591±1.43 3.090±2.52 10.064±0.00 4.150±2.99 5.234±1.25 1.351±0.61 6.675±6.22 4.489±1.61 9.253±0.87
ENST00000439541 N/A N/A N/A N/A N/A N/A 1.565±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000550411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.288±0.00 N/A 31.420±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_00003L CIL_00003L_0001 CGP 12:54164745-54280133
CIL_0002TM CIL_0002TM_0002 CGP 12:54230940-54287088

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 ISS histone deacetylase complex
GO:0000776 IEA kinetochore
GO:0000792 IEA heterochromatin
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0007596 TAS blood coagulation
GO:0010369 IEA chromocenter
GO:0016032 IEA viral process
GO:0016605 IMP PML body
GO:0017053 ISS transcriptional repressor complex
GO:0030674 ISS protein binding, bridging
GO:0031618 NAS nuclear pericentric heterochromatin
GO:0035064 IDA methylated histone binding
GO:0035097 ISS histone methyltransferase complex
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0070491 ISS repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061187 cbx5 chromobox homolog 5 (HP1 alpha homolog, Drosophila) protein_coding Danio_rerio
ENSMUSG00000009575 Cbx5 chromobox 5 protein_coding Mus_musculus

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