C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118152 Cbx5-001 ENSMUSG00000009575 10090 - 15:103191544-103239816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118152 11.101±4.33 5.926±1.85 5.538±0.32 28.739±14.59 6.623±2.24 3.945±1.12 8.340±1.26 9.454±1.68 18.763±19.09 13.871±0.97 4.191±0.29 14.082±3.10 13.027±7.60 4.661±2.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_00003L CIL_00003L_0002 CGP 15:103153307-103239816
CIL_0002TM CIL_0002TM_0003 CGP 15:103191544-103244955

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000776 IDA kinetochore
GO:0000792 IDA heterochromatin
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005720 IDA nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0010369 IDA chromocenter
GO:0016605 IEA PML body
GO:0017053 IDA transcriptional repressor complex
GO:0030674 IPI protein binding, bridging
GO:0035064 ISS methylated histone binding
GO:0035097 IDA histone methyltransferase complex
GO:0042803 IPI protein homodimerization activity
GO:0042826 IPI histone deacetylase binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070491 IPI repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000209875 CBX5-002 protein_coding Homo_sapiens 0 1347
ENST00000439541 CBX5-004 protein_coding Homo_sapiens 0 1290
ENST00000468470 CBX5P1-001 processed_pseudogene Homo_sapiens 0 455
ENST00000547872 CBX5-006 retained_intron Homo_sapiens 0 651
ENST00000550411 CBX5-003 protein_coding Homo_sapiens 0 837
ENST00000552562 CBX5-005 protein_coding Homo_sapiens 0 401

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