C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061187-ENSDARG00000036675 CGP 7955 23:36348765-36361962
GeneTranscriptPositionBiotype
ENSDARG00000036675 (hnrnpa1b)
heterogeneous nuclear ribonucleoprotein A1b 		ENSDART00000053267 (hnrnpa1b-001) 36358083-36361161 protein_coding
ENSDART00000127174 (hnrnpa1b-002) 36359205-36361962 nonsense_mediated_decay
ENSDART00000131711 (hnrnpa1b-004) 36360261-36361113 protein_coding
ENSDART00000134607 (hnrnpa1b-003) 36359972-36361959 protein_coding
ENSDARG00000061187 (cbx5)
chromobox homolog 5 (HP1 alpha homolog, Drosophila) 		ENSDART00000086985 (cbx5-201) 36349703-36357550 protein_coding
ENSDART00000133259 (cbx5-003) 36350750-36357550 protein_coding
ENSDART00000136929 (cbx5-004) 36352745-36357885 protein_coding
ENSDART00000142760 (cbx5-005) 36350562-36357881 protein_coding
ENSDART00000143340 (cbx5-001) 36348765-36357900 protein_coding
ENSDART00000146986 (cbx5-002) 36353193-36357439 protein_coding
ENSDART00000147598 (cbx5-006) 36350779-36357418 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002TM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000094916-ENSG00000135486 CGP 9606 12:54230940-54287088
GeneTranscriptPositionBiotype
ENSG00000094916 (CBX5)
chromobox homolog 5 		ENST00000209875 (CBX5-002) 54230940-54280102 protein_coding
ENST00000439541 (CBX5-004) 54240625-54259592 protein_coding
ENST00000547872 (CBX5-006) 54241747-54252525 retained_intron
ENST00000550411 (CBX5-003) 54241755-54259545 protein_coding
ENST00000552562 (CBX5-005) 54252091-54258427 protein_coding
ENST00000618078 (CBX5-007) 54271841-54280133 processed_transcript
ENSG00000135486 (HNRNPA1)
heterogeneous nuclear ribonucleoprotein A1 		ENST00000330752 (HNRNPA1-023) 54280775-54284881 protein_coding
ENST00000340913 (HNRNPA1-002) 54280755-54285214 protein_coding
ENST00000546500 (HNRNPA1-001) 54280193-54287087 protein_coding
ENST00000547276 (HNRNPA1-012) 54280780-54285251 protein_coding
ENST00000547566 (HNRNPA1-006) 54280748-54287088 nonsense_mediated_decay
ENST00000547708 (HNRNPA1-015) 54280748-54283878 protein_coding
ENST00000547870 (HNRNPA1-016) 54280749-54282472 retained_intron
ENST00000548688 (HNRNPA1-013) 54281006-54282626 protein_coding
ENST00000550482 (HNRNPA1-018) 54282198-54284569 protein_coding
ENST00000550994 (HNRNPA1-014) 54281186-54282284 protein_coding
ENST00000551665 (HNRNPA1-021) 54285907-54287051 retained_intron
ENST00000551679 (HNRNPA1-020) 54283723-54284371 retained_intron
ENST00000551702 (HNRNPA1-019) 54280763-54282486 protein_coding
ENST00000551803 (HNRNPA1-022) 54285947-54287087 processed_transcript
ENSG00000241785 (RN7SL390P)
RNA, 7SL, cytoplasmic 390, pseudogene 		ENST00000470634 (RN7SL390P-201) 54255627-54255910 misc_RNA
ENSG00000257596 (RP11-968A15.2)
 ENST00000547177 (RP11-968A15.2-001) 54262615-54279063 antisense
ENSG00000258344 (RP11-968A15.8)
 ENST00000553061 (RP11-968A15.8-001) 54276631-54345083 sense_overlapping

Homo sapiens Ensembl (GRCh38)

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CIL_0002TM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000009575-ENSMUSG00000046434 CGP 10090 15:103191544-103244955
GeneTranscriptPositionBiotype
ENSMUSG00000046434 (Hnrnpa1)
heterogeneous nuclear ribonucleoprotein A1 		ENSMUST00000036004 (Hnrnpa1-201) 103240432-103244955 protein_coding
ENSMUST00000087351 (Hnrnpa1-202) 103240432-103244955 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TM_0001ENSDARG00000036675ENSDART00000053267ENSDART00000127174ENSDART00000131711ENSDART00000134607ENSDARG00000061187ENSDART00000086985ENSDART00000133259ENSDART00000136929ENSDART00000142760ENSDART00000143340ENSDART00000146986ENSDART00000147598CIL_0002TM_0002ENSG00000094916ENST00000209875ENST00000439541ENST00000547872ENST00000550411ENST00000552562ENST00000618078ENSG00000135486ENST00000330752ENST00000340913ENST00000546500ENST00000547276ENST00000547566ENST00000547708ENST00000547870ENST00000548688ENST00000550482ENST00000550994ENST00000551665ENST00000551679ENST00000551702ENST00000551803ENSG00000241785ENST00000470634ENSG00000257596ENST00000547177ENSG00000258344ENST00000553061CIL_0002TM_0003ENSMUSG00000046434ENSMUST00000036004ENSMUST00000087351
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TM_0001ENSDARG00000036675ENSDART00000053267ENSDART00000127174ENSDARG00000061187ENSDART00000086985ENSDART00000143340CIL_0002TM_0002ENSG00000094916ENST00000209875ENST00000439541ENST00000550411ENSG00000135486ENST00000330752ENST00000340913ENST00000546500ENST00000547276ENST00000547566ENST00000547708ENST00000550482ENSG00000241785ENST00000470634ENSG00000257596ENST00000547177ENSG00000258344ENST00000553061CIL_0002TM_0003ENSMUSG00000046434ENSMUST00000036004ENSMUST00000087351
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036675 ENSDART00000053267 N/A N/A N/A 33.276±26.60 N/A N/A 63.031±33.77 156.518±0.00 10.265±0.00 N/A 14.757±0.00 N/A N/A N/A
ENSDART00000127174 N/A N/A N/A 27.619±0.00 N/A N/A 68.658±7.75 98.164±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000131711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061187 ENSDART00000086985 N/A N/A N/A 24.038±10.43 N/A N/A 14.934±3.78 22.934±3.97 1.438±0.00 N/A 4.524±0.00 N/A N/A N/A
ENSDART00000133259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143340 N/A N/A N/A 12.829±0.52 N/A N/A 3.678±0.50 4.935±0.00 0.176±0.00 N/A N/A N/A N/A N/A
ENSDART00000146986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000094916 ENST00000209875 6.182±0.00 5.752±0.00 6.394±0.00 12.372±1.52 5.394±1.40 5.591±1.43 3.090±2.52 10.064±0.00 4.150±2.99 5.234±1.25 1.351±0.61 6.675±6.22 4.489±1.61 9.253±0.87
ENST00000439541 N/A N/A N/A N/A N/A N/A 1.565±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000547872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.288±0.00 N/A 31.420±0.00
ENST00000552562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135486 ENST00000330752 N/A N/A 8.154±0.00 14.424±0.00 16.924±0.00 14.885±0.00 4.795±0.00 15.780±0.00 19.665±0.00 9.835±0.00 N/A 118.222±94.94 N/A N/A
ENST00000340913 108.033±0.00 130.322±0.00 N/A 59.873±0.00 73.415±0.00 65.920±59.25 20.198±18.80 47.690±0.00 10.718±4.46 49.559±0.00 72.527±0.00 146.058±145.75 130.490±27.63 60.346±28.15
ENST00000546500 N/A 16.649±0.00 N/A 3.196±0.00 N/A 5.950±0.00 0.834±0.00 N/A 3.173±1.15 N/A 2.270±0.00 14.377±10.54 N/A N/A
ENST00000547276 59.751±0.00 79.384±0.00 N/A 44.895±0.00 47.592±0.00 64.953±0.00 21.521±0.00 43.440±0.00 10.808±0.00 51.815±0.00 26.577±0.00 58.723±0.00 58.647±12.65 41.210±0.00
ENST00000547566 N/A N/A N/A N/A N/A N/A N/A N/A 8.017±0.00 38.416±0.00 N/A 255.745±0.00 98.543±21.57 N/A
ENST00000547708 190.881±0.00 216.918±0.00 26.193±0.00 73.421±57.27 95.278±59.29 129.833±99.24 31.252±21.59 56.512±36.63 36.046±10.31 75.734±46.89 49.415±12.67 319.058±276.81 524.487±0.00 191.690±40.29
ENST00000547870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550482 95.306±0.00 103.143±0.00 N/A 49.858±0.00 N/A N/A N/A N/A N/A 13.089±0.00 N/A 200.831±35.14 157.503±0.00 73.830±23.85
ENST00000550994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241785 ENST00000470634 N/A N/A N/A 0.060±0.00 N/A N/A N/A N/A N/A N/A 0.805±0.00 1.237±0.00 N/A 0.154±0.00
ENSG00000257596 ENST00000547177 N/A 0.395±0.00 0.105±0.00 0.091±0.00 0.073±0.00 0.260±0.00 0.058±0.00 0.316±0.09 N/A 0.387±0.00 0.097±0.00 0.202±0.02 0.096±0.08 0.555±0.00
ENSG00000258344 ENST00000553061 0.040±0.00 0.519±0.00 N/A 0.020±0.00 0.057±0.00 0.018±0.00 0.110±0.02 0.097±0.00 0.017±0.00 0.732±0.00 0.070±0.00 0.294±0.15 0.086±0.00 0.027±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046434 ENSMUST00000036004 7.378±0.78 4.168±0.00 N/A 99.897±61.53 N/A N/A 13.617±3.99 N/A 45.781±26.01 7.576±0.00 11.140±0.00 34.086±7.93 44.782±4.62 5.925±0.51
ENSMUST00000087351 65.639±27.26 8.337±2.79 117.021±0.84 214.806±86.00 25.460±6.42 20.110±8.00 14.664±7.37 21.868±3.87 209.731±243.28 41.644±7.55 19.200±5.65 100.530±80.92 180.136±119.72 28.998±7.08

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