C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 3-ketodihydrosphingosine reductase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000010049 Kdsr-001 ENSMUSG00000009905 10090 - 1:106720459-106759727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000010049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000010049 8.669±1.16 9.934±1.56 7.546±0.45 2.440±0.68 5.941±0.82 4.727±0.50 1.286±0.32 4.707±0.45 3.031±1.50 6.844±0.39 0.601±0.13 4.189±1.42 6.211±2.84 0.782±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000B4 CIL_0000B4_0003 CGP 1:106538178-106759727
CIL_0000B7 CIL_0000B7_0003 CGP 1:106720459-106796728

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 ISO endoplasmic reticulum
GO:0006666 ISO 3-keto-sphinganine metabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030148 IGI sphingolipid biosynthetic process
GO:0047560 ISO 3-dehydrosphinganine reductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022621 kdsr-001 protein_coding Danio_rerio 0 398
ENSDART00000155671 kdsr-003 protein_coding Danio_rerio 2e-26 126
ENST00000326575 KDSR-010 protein_coding Homo_sapiens 0 510
ENST00000406396 KDSR-001 protein_coding Homo_sapiens 0 1299
ENST00000585456 KDSR-006 retained_intron Homo_sapiens 0 339
ENST00000585750 KDSR-007 retained_intron Homo_sapiens 0 429
ENST00000586791 KDSR-002 retained_intron Homo_sapiens 0 536
ENST00000588089 KDSR-011 retained_intron Homo_sapiens 0 370
ENST00000589530 KDSR-008 retained_intron Homo_sapiens 0 422
ENST00000589592 KDSR-012 processed_transcript Homo_sapiens 0 494
ENST00000591902 KDSR-009 protein_coding Homo_sapiens 0 560
ENST00000592327 KDSR-013 protein_coding Homo_sapiens 0 520

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