C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: early B cell factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010476 Ebf3 10090 - 7:137193673-137314445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033378 Ebf3-201 137193673-137314445 protein_coding
  ENSMUST00000106118 Ebf3-202 137193673-137314445 protein_coding
  ENSMUST00000168203 Ebf3-203 137194698-137314414 protein_coding
  ENSMUST00000169486 Ebf3-204 137193673-137314445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033378ENSMUST00000106118ENSMUST00000168203ENSMUST00000169486
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033378 3.266±1.49 0.938±0.65 0.174±0.01 16.122±8.05 1.907±0.86 0.514±0.03 0.783±0.50 0.178±0.11 0.032±0.03 0.183±0.00 0.736±0.50 0.391±0.26 0.205±0.09 0.291±0.00
ENSMUST00000106118 N/A 0.341±0.00 N/A 8.270±0.00 2.308±0.00 0.068±0.00 0.337±0.00 0.180±0.08 N/A N/A N/A 0.105±0.00 N/A N/A
ENSMUST00000168203 1.915±1.14 1.712±0.41 N/A N/A 3.207±1.62 0.394±0.17 0.542±0.00 0.185±0.09 0.023±0.01 0.156±0.04 N/A 0.528±0.19 0.128±0.00 0.552±0.32
ENSMUST00000169486 0.813±0.20 N/A 0.088±0.00 5.713±0.00 1.477±0.57 0.342±0.20 0.676±0.15 N/A 0.039±0.03 0.081±0.00 0.545±0.27 0.320±0.09 0.268±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OP CIL_0007OP_0002 UCNEbase 7:135757037-137452523
CIL_00081R CIL_00081R_0002 VISTA 7:136702009-137303274
CIL_00097C CIL_00097C_0002 VISTA 7:136705038-137306321
CIL_0009BD CIL_0009BD_0002 VISTA 7:136739207-137341141
CIL_0008TP CIL_0008TP_0002 VISTA 7:136791736-137393087
CIL_0001LI CIL_0001LI_0002 CGP 7:136894611-137314445
CIL_0007UL CIL_0007UL_0002 VISTA 7:136950056-137551790

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016300 ebf3 early B-cell factor 3 protein_coding Danio_rerio
ENSG00000108001 EBF3 early B-cell factor 3 protein_coding Homo_sapiens

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