C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B cell factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169486 Ebf3-204 ENSMUSG00000010476 10090 - 7:137193673-137314445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000169486
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000169486 0.813±0.20 0.088±0.00 5.713±0.00 1.477±0.57 0.342±0.20 0.676±0.15 0.039±0.03 0.081±0.00 0.545±0.27 0.320±0.09 0.268±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OP CIL_0007OP_0002 UCNEbase 7:135757037-137452523
CIL_00081R CIL_00081R_0002 VISTA 7:136702009-137303274
CIL_00097C CIL_00097C_0002 VISTA 7:136705038-137306321
CIL_0009BD CIL_0009BD_0002 VISTA 7:136739207-137341141
CIL_0008TP CIL_0008TP_0002 VISTA 7:136791736-137393087
CIL_0001LI CIL_0001LI_0002 CGP 7:136894611-137314445
CIL_0007UL CIL_0007UL_0002 VISTA 7:136950056-137551790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085381 ebf3-001 protein_coding Danio_rerio 0 1258
ENSDART00000138241 ebf3-002 protein_coding Danio_rerio 0 346
ENST00000355311 EBF3-001 protein_coding Homo_sapiens 0 4087
ENST00000368648 EBF3-002 protein_coding Homo_sapiens 0 2422
ENST00000440978 EBF3-004 protein_coding Homo_sapiens 0 769

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