C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: early B cell factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033378 Ebf3-201 ENSMUSG00000010476 10090 - 7:137193673-137314445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033378 3.266±1.49 0.938±0.65 0.174±0.01 16.122±8.05 1.907±0.86 0.514±0.03 0.783±0.50 0.178±0.11 0.032±0.03 0.183±0.00 0.736±0.50 0.391±0.26 0.205±0.09 0.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OP CIL_0007OP_0002 UCNEbase 7:135757037-137452523
CIL_00081R CIL_00081R_0002 VISTA 7:136702009-137303274
CIL_00097C CIL_00097C_0002 VISTA 7:136705038-137306321
CIL_0009BD CIL_0009BD_0002 VISTA 7:136739207-137341141
CIL_0008TP CIL_0008TP_0002 VISTA 7:136791736-137393087
CIL_0001LI CIL_0001LI_0002 CGP 7:136894611-137314445
CIL_0007UL CIL_0007UL_0002 VISTA 7:136950056-137551790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085381 ebf3-001 protein_coding Danio_rerio 0 1356
ENST00000355311 EBF3-001 protein_coding Homo_sapiens 0 2290
ENST00000368648 EBF3-002 protein_coding Homo_sapiens 0 4606
ENST00000440978 EBF3-004 protein_coding Homo_sapiens 0 427

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