C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication protein A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159594 Rpa3-002 ENSMUSG00000012483 10090 - 6:8257221-8259140 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyMuscleOvaryTestisENSMUST00000159594
Transcript ID Adrenal Brain Colon Kidney Muscle Ovary Testis
ENSMUST00000159594 0.784±0.00 2.953±0.00 1.009±0.31 0.408±0.00 0.537±0.18 1.621±0.82 0.281±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V4 CIL_0002V4_0002 CGP 6:8209222-8259173
CIL_0002V7 CIL_0002V7_0002 CGP 6:8255936-8597480

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223129 RPA3-001 protein_coding Homo_sapiens 1.99965e-42 178
ENST00000313760 AC010894.4-001 processed_pseudogene Homo_sapiens 3e-34 148
ENST00000396682 RPA3-003 protein_coding Homo_sapiens 8.99634e-43 178
ENST00000401447 RPA3-006 protein_coding Homo_sapiens 3e-24 115
ENST00000402839 RP11-96J19.1-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000406109 RPA3-004 protein_coding Homo_sapiens 2e-26 122
ENST00000462723 RPA3-007 retained_intron Homo_sapiens 0 193
ENST00000463632 RPA3-008 retained_intron Homo_sapiens 1e-30 137

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