C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication protein A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000012627 Rpa3-001 ENSMUSG00000012483 10090 - 6:8255936-8259173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012627 2.969±0.88 0.424±0.13 12.247±2.09 13.379±4.32 1.366±0.90 1.427±1.00 2.686±0.39 2.212±0.58 23.211±25.42 2.112±0.59 3.755±0.77 11.344±10.89 41.138±25.71 2.221±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V4 CIL_0002V4_0002 CGP 6:8209222-8259173
CIL_0002V7 CIL_0002V7_0002 CGP 6:8255936-8597480

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0003684 IEA damaged DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005662 IEA DNA replication factor A complex
GO:0006284 IEA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0006298 IEA mismatch repair
GO:0007346 IMP regulation of mitotic cell cycle
GO:0042127 IMP regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223129 RPA3-001 protein_coding Homo_sapiens 0 353
ENST00000313760 AC010894.4-001 processed_pseudogene Homo_sapiens 0 270
ENST00000396682 RPA3-003 protein_coding Homo_sapiens 0 339
ENST00000401447 RPA3-006 protein_coding Homo_sapiens 0 274
ENST00000402839 RP11-96J19.1-001 processed_pseudogene Homo_sapiens 0 283
ENST00000406109 RPA3-004 protein_coding Homo_sapiens 0 283
ENST00000462723 RPA3-007 retained_intron Homo_sapiens 1.00053e-42 178
ENST00000463632 RPA3-008 retained_intron Homo_sapiens 4e-26 122
ENST00000483031 RPA3-002 retained_intron Homo_sapiens 2e-38 163

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