C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 170
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000120925 RNF170 9606 - 8:42849637-42897290 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000240159 RNF170-004 42855248-42896655 nonsense_mediated_decay
  ENST00000319073 RNF170-201 42855709-42896588 protein_coding
  ENST00000319104 RNF170-005 42849637-42896585 protein_coding
  ENST00000524954 RNF170-006 42887728-42897290 protein_coding
  ENST00000526349 RNF170-003 42855707-42896706 protein_coding
  ENST00000527424 RNF170-001 42853301-42896721 protein_coding
  ENST00000528318 RNF170-002 42861330-42896723 retained_intron
  ENST00000531440 RNF170-007 42865466-42896598 protein_coding
  ENST00000534961 RNF170-202 42853297-42896723 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240159ENST00000319073ENST00000526349ENST00000527424ENST00000528318ENST00000534961
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240159 N/A N/A N/A 0.923±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000319073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.604±0.00 N/A
ENST00000526349 N/A N/A N/A N/A N/A 0.578±0.00 N/A N/A 0.537±0.00 N/A 11.761±0.00 15.372±0.00 5.498±0.00
ENST00000527424 3.582±0.00 0.363±0.00 3.438±0.36 1.584±0.69 1.469±0.00 0.701±0.26 2.386±0.03 1.434±0.38 0.953±0.00 1.163±0.19 2.869±0.86 3.767±0.62 2.089±0.58
ENST00000528318 N/A 1.756±0.00 N/A 1.339±0.00 1.938±0.00 0.988±0.00 N/A 1.793±0.00 N/A N/A N/A N/A N/A
ENST00000534961 N/A N/A 1.400±0.00 N/A 0.395±0.00 1.068±0.00 1.875±0.00 N/A 0.542±0.32 N/A N/A 1.028±0.00 0.801±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LW CIL_0005LW_0002 CGP 8:42849637-43030539

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028476 rnf170 ring finger protein 170 protein_coding Danio_rerio
ENSMUSG00000013878 Rnf170 ring finger protein 170 protein_coding Mus_musculus

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