C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014767 Tbp 10090 + 17:15499888-15528379 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014911 Tbp-003 15499888-15517427 protein_coding
  ENSMUST00000117593 Tbp-004 15499960-15517427 protein_coding
  ENSMUST00000118001 Tbp-002 15499910-15517427 protein_coding
  ENSMUST00000119879 Tbp-011 15499922-15514372 protein_coding
  ENSMUST00000143924 Tbp-005 15499912-15507359 protein_coding
  ENSMUST00000147081 Tbp-006 15499901-15507454 protein_coding
  ENSMUST00000149518 Tbp-009 15515483-15516935 retained_intron
  ENSMUST00000153480 Tbp-008 15504583-15516868 protein_coding
  ENSMUST00000155051 Tbp-007 15499928-15504447 protein_coding
  ENSMUST00000159197 Tbp-010 15499888-15504605 protein_coding
  ENSMUST00000162505 Tbp-001 15499888-15528379 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014911ENSMUST00000118001ENSMUST00000119879ENSMUST00000143924ENSMUST00000147081ENSMUST00000162505
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014911 2.304±0.67 N/A 2.842±0.30 10.826±1.67 2.535±0.00 N/A 1.753±0.37 2.399±0.00 5.607±1.50 3.568±0.14 2.129±0.40 6.395±0.40 5.555±1.41 21.276±1.19
ENSMUST00000118001 4.081±1.93 10.292±2.15 6.756±0.33 8.088±1.44 5.637±0.42 7.864±1.17 2.121±0.89 6.776±0.77 7.577±3.19 8.026±0.43 0.975±0.00 9.342±1.88 7.297±2.68 18.047±1.68
ENSMUST00000119879 4.972±1.52 8.261±0.00 N/A 8.287±0.00 7.391±0.63 11.859±0.00 3.474±0.15 6.380±0.99 6.244±0.00 7.113±0.37 N/A 14.431±2.64 19.086±3.98 31.792±4.21
ENSMUST00000143924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.522±4.32
ENSMUST00000147081 N/A N/A N/A N/A N/A N/A N/A N/A 5.294±0.00 N/A N/A N/A N/A 26.283±0.00
ENSMUST00000162505 N/A N/A 0.564±0.00 0.742±0.43 N/A N/A 0.186±0.03 N/A 0.484±0.13 N/A 0.158±0.04 0.351±0.00 0.425±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360
CIL_00018G CIL_00018G_0002 CGP 17:15475721-15528379
CIL_00018F CIL_00018F_0002 CGP 17:15499888-15528379

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000120 TAS RNA polymerase I transcription factor complex
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0005672 IEA transcription factor TFIIA complex
GO:0005719 IEA nuclear euchromatin
GO:0005737 IDA cytoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0006383 IMP transcription from RNA polymerase III promoter
GO:0007283 IEA spermatogenesis
GO:0008134 IEA transcription factor binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045120 IDA pronucleus
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0070491 IEA repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014994 tbp TATA box binding protein protein_coding Danio_rerio
ENSG00000112592 TBP TATA box binding protein protein_coding Homo_sapiens

Loading