C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162505 Tbp-001 ENSMUSG00000014767 10090 + 17:15499888-15528379 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverMuscleOvaryPlacentaENSMUST00000162505
Transcript ID Bladder Brain Heart Liver Muscle Ovary Placenta
ENSMUST00000162505 0.564±0.00 0.742±0.43 0.186±0.03 0.484±0.13 0.158±0.04 0.351±0.00 0.425±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360
CIL_00018G CIL_00018G_0002 CGP 17:15475721-15528379
CIL_00018F CIL_00018F_0002 CGP 17:15499888-15528379

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000120 TAS RNA polymerase I transcription factor complex
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0005672 IEA transcription factor TFIIA complex
GO:0005719 IEA nuclear euchromatin
GO:0005737 IDA cytoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0006383 IMP transcription from RNA polymerase III promoter
GO:0007283 IEA spermatogenesis
GO:0008134 IEA transcription factor binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045120 IDA pronucleus
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0070491 IEA repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016211 tbp-001 protein_coding Danio_rerio 0 558
ENST00000167218 PDCD2-009 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000230354 TBP-001 protein_coding Homo_sapiens 0 948
ENST00000392090 PDCD2-007 protein_coding Homo_sapiens 0 196
ENST00000392092 TBP-201 protein_coding Homo_sapiens 0 948
ENST00000421512 TBP-004 protein_coding Homo_sapiens 0 387
ENST00000446829 TBP-002 protein_coding Homo_sapiens 0 372
ENST00000539212 PDCD2-011 nonsense_mediated_decay Homo_sapiens 3e-24 115
ENST00000540980 TBP-202 protein_coding Homo_sapiens 0 948
ENST00000541970 PDCD2-001 protein_coding Homo_sapiens 0 198
ENST00000542896 PDCD2-006 protein_coding Homo_sapiens 4e-37 159
ENST00000543284 PDCD2-008 retained_intron Homo_sapiens 0 198
ENST00000544866 PDCD2-012 nonsense_mediated_decay Homo_sapiens 3e-37 159
ENST00000545869 PDCD2-010 nonsense_mediated_decay Homo_sapiens 7e-39 165
ENST00000616883 TBP-203 protein_coding Homo_sapiens 0 898

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