C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA box binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112592 TBP 9606 + 6:170554302-170572870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000230354 TBP-001 170554379-170572870 protein_coding
  ENST00000392092 TBP-201 170554333-170572869 protein_coding
  ENST00000421512 TBP-004 170554302-170566957 protein_coding
  ENST00000423353 TBP-003 170554605-170562188 protein_coding
  ENST00000446829 TBP-002 170569612-170572853 protein_coding
  ENST00000540980 TBP-202 170554333-170572869 protein_coding
  ENST00000616883 TBP-203 170554333-170572869 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230354ENST00000392092ENST00000421512ENST00000423353ENST00000446829ENST00000540980ENST00000616883
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230354 0.958±0.00 1.955±0.00 0.414±0.00 0.986±0.67 N/A N/A 0.110±0.00 0.301±0.00 1.869±0.00 N/A N/A 2.835±0.14 2.412±1.56 5.049±0.00
ENST00000392092 N/A N/A N/A N/A 1.334±0.00 1.231±0.00 N/A N/A N/A 1.292±0.00 N/A 2.242±0.51 2.192±0.00 N/A
ENST00000421512 N/A N/A 0.558±0.00 0.917±0.00 N/A N/A 0.326±0.00 N/A 0.908±0.00 0.853±0.20 N/A 5.020±0.00 N/A N/A
ENST00000423353 N/A N/A N/A N/A N/A N/A 0.675±0.00 N/A N/A N/A 0.905±0.00 N/A N/A N/A
ENST00000446829 N/A N/A N/A N/A N/A N/A N/A 1.053±0.00 1.015±0.00 N/A N/A N/A N/A N/A
ENST00000540980 N/A 1.781±0.00 N/A N/A 0.584±0.00 0.681±0.00 N/A 0.608±0.00 N/A N/A 1.048±0.26 N/A 0.943±0.00 N/A
ENST00000616883 1.805±0.00 N/A N/A 1.193±0.30 1.204±0.51 1.188±0.45 2.255±0.00 3.974±0.00 1.716±0.00 1.086±0.00 N/A 6.552±4.41 2.312±0.99 20.601±8.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018G CIL_00018G_0001 CGP 6:170535117-170572870
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001103 IEA RNA polymerase II repressing transcription factor binding
GO:0001939 IEA female pronucleus
GO:0001940 IEA male pronucleus
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005672 IDA transcription factor TFIIA complex
GO:0005719 IDA nuclear euchromatin
GO:0005737 IEA cytoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 IC transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006383 IDA transcription from RNA polymerase III promoter
GO:0007283 IEA spermatogenesis
GO:0008134 IPI transcription factor binding
GO:0008219 IEA cell death
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045120 IEA pronucleus
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0070491 IPI repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014994 tbp TATA box binding protein protein_coding Danio_rerio
ENSMUSG00000014767 Tbp TATA box binding protein protein_coding Mus_musculus

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