C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: programmed cell death 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014771 Pdcd2 10090 - 17:15519208-15527301 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054450 Pdcd2-001 15521575-15527301 protein_coding
  ENSMUST00000125709 Pdcd2-005 15521593-15522143 retained_intron
  ENSMUST00000137233 Pdcd2-004 15522791-15526986 retained_intron
  ENSMUST00000139610 Pdcd2-003 15522703-15527084 retained_intron
  ENSMUST00000154293 Pdcd2-002 15519208-15527281 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000054450ENSMUST00000125709ENSMUST00000137233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000054450 10.960±3.02 40.553±12.41 10.305±0.04 15.281±2.79 22.987±7.30 25.655±4.09 4.425±1.52 14.370±2.69 12.734±2.68 14.173±2.17 6.034±1.60 38.052±10.54 10.722±2.73
ENSMUST00000125709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.053±0.00
ENSMUST00000137233 N/A N/A N/A 11.868±0.00 21.177±0.00 N/A N/A N/A N/A N/A N/A 19.239±0.00 26.299±12.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360
CIL_00018G CIL_00018G_0002 CGP 17:15475721-15528379
CIL_00018F CIL_00018F_0002 CGP 17:15499888-15528379

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0012501 IEA programmed cell death
GO:0019899 IEA enzyme binding
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007892 pdcd2 programmed cell death 2 protein_coding Danio_rerio
ENSG00000071994 PDCD2 programmed cell death 2 protein_coding Homo_sapiens

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