C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054450 Pdcd2-001 ENSMUSG00000014771 10090 - 17:15521575-15527301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000054450
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000054450 10.960±3.02 40.553±12.41 10.305±0.04 15.281±2.79 22.987±7.30 25.655±4.09 4.425±1.52 14.370±2.69 12.734±2.68 14.173±2.17 6.034±1.60 38.052±10.54 10.722±2.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360
CIL_00018G CIL_00018G_0002 CGP 17:15475721-15528379
CIL_00018F CIL_00018F_0002 CGP 17:15499888-15528379

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0012501 IEA programmed cell death
GO:0019899 IEA enzyme binding
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000167218 PDCD2-009 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000392090 PDCD2-007 protein_coding Homo_sapiens 0 804
ENST00000539212 PDCD2-011 nonsense_mediated_decay Homo_sapiens 3e-24 115
ENST00000541970 PDCD2-001 protein_coding Homo_sapiens 0 983
ENST00000542896 PDCD2-006 protein_coding Homo_sapiens 0 793
ENST00000543284 PDCD2-008 retained_intron Homo_sapiens 0 350
ENST00000544866 PDCD2-012 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000545869 PDCD2-010 nonsense_mediated_decay Homo_sapiens 0 610

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