C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: programmed cell death 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071994 PDCD2 9606 - 6:170575295-170584692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000167218 PDCD2-009 170577436-170584645 nonsense_mediated_decay
  ENST00000392090 PDCD2-007 170577559-170584581 protein_coding
  ENST00000443345 PDCD2-004 170581792-170584654 protein_coding
  ENST00000453163 PDCD2-002 170581089-170584612 protein_coding
  ENST00000537445 PDCD2-005 170581745-170584615 protein_coding
  ENST00000538195 PDCD2-014 170580093-170584226 protein_coding
  ENST00000539212 PDCD2-011 170578883-170584404 nonsense_mediated_decay
  ENST00000541970 PDCD2-001 170575295-170584660 protein_coding
  ENST00000542896 PDCD2-006 170578482-170584612 protein_coding
  ENST00000543284 PDCD2-008 170575328-170579721 retained_intron
  ENST00000544336 PDCD2-003 170581747-170584692 nonsense_mediated_decay
  ENST00000544755 PDCD2-013 170582849-170584421 nonsense_mediated_decay
  ENST00000544866 PDCD2-012 170578507-170584389 nonsense_mediated_decay
  ENST00000545869 PDCD2-010 170577594-170584605 nonsense_mediated_decay
  ENST00000614056 PDCD2-201 170581748-170584692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000167218ENST00000392090ENST00000443345ENST00000453163ENST00000537445ENST00000541970ENST00000542896ENST00000543284ENST00000544336ENST00000544866ENST00000545869
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000167218 5.480±0.00 N/A N/A 3.137±0.00 4.756±0.00 5.992±2.24 3.004±1.37 7.470±0.27 6.889±0.00 6.188±0.00 7.062±2.57 22.617±0.00 6.922±1.75 11.214±0.00
ENST00000392090 N/A N/A N/A 2.780±0.00 N/A N/A N/A N/A N/A N/A 2.931±0.00 28.500±19.43 10.026±2.14 11.136±0.00
ENST00000443345 N/A N/A 0.821±0.00 N/A 1.796±0.00 2.024±0.00 N/A 2.766±0.00 2.979±0.00 1.595±0.00 1.521±0.00 N/A N/A N/A
ENST00000453163 N/A N/A N/A 1.666±0.00 N/A 1.513±0.00 0.332±0.00 N/A N/A 1.523±0.00 N/A 6.286±3.21 2.035±0.00 2.339±0.66
ENST00000537445 N/A N/A 1.031±0.00 3.553±0.00 N/A N/A 1.114±0.00 N/A N/A N/A N/A N/A 5.485±0.15 4.190±0.00
ENST00000541970 1.501±0.00 N/A N/A 1.408±0.00 N/A 3.096±0.00 1.823±0.00 3.163±0.00 2.198±0.09 1.245±0.00 1.505±0.00 5.546±0.00 2.450±0.18 4.659±0.00
ENST00000542896 N/A N/A N/A N/A N/A N/A N/A 2.892±0.00 N/A 2.016±0.00 N/A N/A N/A N/A
ENST00000543284 N/A 3.537±0.00 N/A 0.858±0.00 0.974±0.02 0.760±0.00 0.314±0.00 0.998±0.00 1.193±0.00 0.734±0.17 N/A N/A N/A N/A
ENST00000544336 5.614±0.00 N/A N/A 3.952±0.00 3.790±0.00 N/A N/A 5.506±0.00 N/A N/A N/A 29.550±0.00 6.934±0.00 N/A
ENST00000544866 N/A 17.970±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.680±0.00 N/A
ENST00000545869 N/A N/A N/A N/A 8.799±0.00 10.949±0.00 5.299±0.00 10.420±0.00 6.938±0.00 6.334±0.00 N/A 58.353±0.00 9.910±0.00 8.851±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0012501 IEA programmed cell death
GO:0019899 IPI enzyme binding
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007892 pdcd2 programmed cell death 2 protein_coding Danio_rerio
ENSMUSG00000014771 Pdcd2 programmed cell death 2 protein_coding Mus_musculus

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