C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TraB domain containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015363 Trabd 10090 + 15:89075124-89087077 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000081702 Trabd-001 89076013-89087077 protein_coding
  ENSMUST00000163696 Trabd-007 89084709-89085624 retained_intron
  ENSMUST00000165690 Trabd-004 89076124-89086133 protein_coding
  ENSMUST00000168863 Trabd-006 89075124-89085309 protein_coding
  ENSMUST00000169870 Trabd-002 89076072-89087071 nonsense_mediated_decay
  ENSMUST00000169891 Trabd-003 89076094-89086130 protein_coding
  ENSMUST00000170754 Trabd-005 89082529-89087071 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081702ENSMUST00000165690ENSMUST00000168863ENSMUST00000169870ENSMUST00000169891ENSMUST00000170754
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081702 11.934±1.67 9.549±2.32 11.682±1.32 8.119±0.69 13.504±1.43 20.054±3.39 15.456±1.27 17.057±3.47 15.648±7.71 14.583±3.11 11.267±1.14 12.117±3.90 9.207±3.40 4.513±1.06
ENSMUST00000165690 3.113±0.00 5.500±0.00 N/A N/A N/A N/A N/A N/A 5.968±1.56 4.671±0.89 3.443±0.50 3.059±0.00 5.331±0.33 2.418±0.20
ENSMUST00000168863 N/A N/A N/A 12.736±0.00 N/A N/A N/A N/A N/A N/A N/A 35.908±0.00 32.261±0.57 38.942±0.00
ENSMUST00000169870 3.499±0.95 12.137±1.90 3.767±0.10 2.349±0.41 10.850±3.60 17.098±4.42 N/A 7.455±1.46 5.050±3.09 6.861±0.92 3.020±0.00 10.322±3.45 7.199±3.27 2.208±0.18
ENSMUST00000169891 N/A N/A N/A 7.170±0.00 N/A N/A N/A N/A N/A N/A N/A 13.535±0.00 17.691±4.65 3.697±1.22
ENSMUST00000170754 1.468±0.21 N/A N/A 1.019±0.06 2.181±0.31 2.868±0.00 N/A N/A N/A 1.708±0.04 N/A 2.137±0.58 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GZ CIL_0000GZ_0002 CGP 15:89059734-89087077
CIL_000098 CIL_000098_0002 CGP 15:89075124-89100340

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010445 trabd TraB domain containing protein_coding Danio_rerio
ENSG00000170638 TRABD TraB domain containing protein_coding Homo_sapiens

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