C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TraB domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169870 Trabd-002 ENSMUSG00000015363 10090 + 15:89076072-89087071 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169870
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169870 3.499±0.95 12.137±1.90 3.767±0.10 2.349±0.41 10.850±3.60 17.098±4.42 7.455±1.46 5.050±3.09 6.861±0.92 3.020±0.00 10.322±3.45 7.199±3.27 2.208±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GZ CIL_0000GZ_0002 CGP 15:89059734-89087077
CIL_000098 CIL_000098_0002 CGP 15:89075124-89100340

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303434 TRABD-001 protein_coding Homo_sapiens 0 1160
ENST00000380909 TRABD-003 protein_coding Homo_sapiens 0 1201
ENST00000395827 TRABD-004 protein_coding Homo_sapiens 0 1160
ENST00000395829 TRABD-005 protein_coding Homo_sapiens 0 1160
ENST00000463233 TRABD-002 retained_intron Homo_sapiens 0 846
ENST00000472677 TRABD-006 retained_intron Homo_sapiens 0 318

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