C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111384 Rxrg-003 ENSMUSG00000015843 10090 + 1:167598480-167639618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverMuscleENSMUST00000111384
Transcript ID Brain Colon Liver Muscle
ENSMUST00000111384 1.948±0.00 0.239±0.08 0.038±0.02 4.295±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MM CIL_0005MM_0002 CGP 1:167598384-167848741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0051289 IDA protein homotetramerization
GO:1901522 IDA positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000002554 rxrgb-001 protein_coding Danio_rerio 0 612
ENST00000359842 RXRG-001 protein_coding Homo_sapiens 0 2361
ENST00000465764 RXRG-003 processed_transcript Homo_sapiens 0 313
ENST00000470566 RXRG-002 processed_transcript Homo_sapiens 0 756
ENST00000619224 RXRG-201 protein_coding Homo_sapiens 0 1718

Loading