C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoid X receptor gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111386 Rxrg-002 ENSMUSG00000015843 10090 + 1:167598460-167639424 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111386
Transcript ID Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111386 0.544±0.09 0.325±0.10 0.852±0.35 0.186±0.05 0.293±0.03 0.034±0.03 0.269±0.12 3.375±0.00 0.229±0.06 0.049±0.01 0.214±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MM CIL_0005MM_0002 CGP 1:167598384-167848741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0004886 IDA 9-cis retinoic acid receptor activity
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0051289 IDA protein homotetramerization
GO:1901522 IDA positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000002554 rxrgb-001 protein_coding Danio_rerio 0 612
ENST00000359842 RXRG-001 protein_coding Homo_sapiens 0 1975
ENST00000465764 RXRG-003 processed_transcript Homo_sapiens 8e-37 158
ENST00000470566 RXRG-002 processed_transcript Homo_sapiens 0 756
ENST00000619224 RXRG-201 protein_coding Homo_sapiens 0 1555

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