C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: H2A histone family, member Y
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015937 H2afy 10090 - 13:56073619-56136361 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016081 H2afy-001 56073619-56135631 protein_coding
  ENSMUST00000045788 H2afy-002 56073619-56135631 protein_coding
  ENSMUST00000137835 H2afy-008 56074166-56084521 retained_intron
  ENSMUST00000139511 H2afy-003 56095556-56135530 processed_transcript
  ENSMUST00000141031 H2afy-004 56100889-56135440 retained_intron
  ENSMUST00000141589 H2afy-007 56074359-56090058 retained_intron
  ENSMUST00000154564 H2afy-006 56104441-56134825 processed_transcript
  ENSMUST00000154778 H2afy-005 56104430-56136361 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016081ENSMUST00000045788ENSMUST00000139511ENSMUST00000141589ENSMUST00000154564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016081 12.337±0.42 N/A 14.721±0.06 68.528±5.22 5.673±1.37 6.495±0.62 N/A 8.127±1.62 12.899±7.40 8.048±0.56 N/A 20.768±8.91 14.001±7.64 9.838±4.86
ENSMUST00000045788 9.913±5.14 9.223±1.94 30.014±1.71 N/A 13.149±3.43 10.767±1.93 4.415±0.59 15.417±3.19 9.882±3.45 16.693±2.67 15.056±4.44 11.878±3.16 7.971±0.43 N/A
ENSMUST00000139511 17.188±7.35 66.140±11.58 27.950±0.00 38.309±4.12 56.278±10.58 62.535±10.57 N/A 20.678±3.11 21.167±5.76 30.978±8.54 11.323±0.00 62.972±10.05 19.464±6.64 19.026±0.00
ENSMUST00000141589 N/A N/A N/A 103.503±0.00 N/A N/A N/A N/A N/A N/A N/A 202.842±0.00 93.000±30.64 62.327±0.00
ENSMUST00000154564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.590±1.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_00083J CIL_00083J_0002 VISTA 13:55859018-56461187

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000182 IEA rDNA binding
GO:0000790 IEA nuclear chromatin
GO:0000793 IDA condensed chromosome
GO:0001740 ISO Barr body
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005721 IEA pericentric heterochromatin
GO:0005730 IEA nucleolus
GO:0005813 TAS centrosome
GO:0006334 IEA nucleosome assembly
GO:0007549 ISO dosage compensation
GO:0010385 IEA double-stranded methylated DNA binding
GO:0016568 IEA chromatin modification
GO:0019901 IEA protein kinase binding
GO:0030291 IEA protein serine/threonine kinase inhibitor activity
GO:0031490 IEA chromatin DNA binding
GO:0033128 IEA negative regulation of histone phosphorylation
GO:0035098 IEA ESC/E(Z) complex
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045814 IEA negative regulation of gene expression, epigenetic
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0071169 IEA establishment of protein localization to chromatin
GO:0071901 IEA negative regulation of protein serine/threonine kinase activity
GO:1901837 IMP negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:1902750 IEA negative regulation of cell cycle G2/M phase transition

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053442 h2afy H2A histone family, member Y protein_coding Danio_rerio
ENSG00000113648 H2AFY H2A histone family, member Y protein_coding Homo_sapiens

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