C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member Y
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139511 H2afy-003 ENSMUSG00000015937 10090 - 13:56095556-56135530 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139511 17.188±7.35 66.140±11.58 27.950±0.00 38.309±4.12 56.278±10.58 62.535±10.57 20.678±3.11 21.167±5.76 30.978±8.54 11.323±0.00 62.972±10.05 19.464±6.64 19.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_00083J CIL_00083J_0002 VISTA 13:55859018-56461187

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304332 H2AFY-004 protein_coding Homo_sapiens 0 736
ENST00000312469 H2AFY-002 protein_coding Homo_sapiens 0 732
ENST00000360597 H2AFY-008 processed_transcript Homo_sapiens 0 739
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 2e-21 106
ENST00000504197 H2AFY-007 retained_intron Homo_sapiens 0 521
ENST00000506218 H2AFY-014 retained_intron Homo_sapiens 0 512
ENST00000506532 H2AFY-019 processed_transcript Homo_sapiens 0 606
ENST00000506671 H2AFY-006 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000507868 H2AFY-017 retained_intron Homo_sapiens 0 737
ENST00000508120 H2AFY-021 processed_transcript Homo_sapiens 0 486
ENST00000508785 H2AFY-015 processed_transcript Homo_sapiens 0 737
ENST00000510038 H2AFY-005 protein_coding Homo_sapiens 0 721
ENST00000511689 H2AFY-001 protein_coding Homo_sapiens 0 760
ENST00000512507 H2AFY-009 processed_transcript Homo_sapiens 2e-25 124
ENST00000513210 H2AFY-016 processed_transcript Homo_sapiens 0 780

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