C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member Y
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016081 H2afy-001 ENSMUSG00000015937 10090 - 13:56073619-56135631 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000016081
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000016081 12.337±0.42 14.721±0.06 68.528±5.22 5.673±1.37 6.495±0.62 8.127±1.62 12.899±7.40 8.048±0.56 20.768±8.91 14.001±7.64 9.838±4.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_00083J CIL_00083J_0002 VISTA 13:55859018-56461187

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000182 IEA rDNA binding
GO:0000790 IEA nuclear chromatin
GO:0000793 IDA condensed chromosome
GO:0001740 ISO Barr body
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005721 IEA pericentric heterochromatin
GO:0005730 IEA nucleolus
GO:0005813 TAS centrosome
GO:0006334 IEA nucleosome assembly
GO:0007549 ISO dosage compensation
GO:0010385 IEA double-stranded methylated DNA binding
GO:0016568 IEA chromatin modification
GO:0019901 IEA protein kinase binding
GO:0030291 IEA protein serine/threonine kinase inhibitor activity
GO:0031490 IEA chromatin DNA binding
GO:0033128 IEA negative regulation of histone phosphorylation
GO:0035098 IEA ESC/E(Z) complex
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045814 IEA negative regulation of gene expression, epigenetic
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0071169 IEA establishment of protein localization to chromatin
GO:0071901 IEA negative regulation of protein serine/threonine kinase activity
GO:1901837 IMP negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:1902750 IEA negative regulation of cell cycle G2/M phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304332 H2AFY-004 protein_coding Homo_sapiens 0 1709
ENST00000312469 H2AFY-002 protein_coding Homo_sapiens 0 1426
ENST00000360597 H2AFY-008 processed_transcript Homo_sapiens 0 760
ENST00000377459 HIST1H2AH-001 protein_coding Homo_sapiens 2e-21 106
ENST00000423969 H2AFY-003 protein_coding Homo_sapiens 0 582
ENST00000432382 C5orf66-201 protein_coding Homo_sapiens 0 235
ENST00000451949 H2AFY-010 processed_transcript Homo_sapiens 0 806
ENST00000504197 H2AFY-007 retained_intron Homo_sapiens 0 507
ENST00000505827 H2AFY-023 retained_intron Homo_sapiens 0 276
ENST00000506218 H2AFY-014 retained_intron Homo_sapiens 0 512
ENST00000506532 H2AFY-019 processed_transcript Homo_sapiens 0 606
ENST00000506671 H2AFY-006 nonsense_mediated_decay Homo_sapiens 0 719
ENST00000507868 H2AFY-017 retained_intron Homo_sapiens 0 723
ENST00000508120 H2AFY-021 processed_transcript Homo_sapiens 0 472
ENST00000508785 H2AFY-015 processed_transcript Homo_sapiens 0 725
ENST00000510038 H2AFY-005 protein_coding Homo_sapiens 0 1502
ENST00000511494 H2AFY-011 retained_intron Homo_sapiens 0 739
ENST00000511689 H2AFY-001 protein_coding Homo_sapiens 0 1877
ENST00000512507 H2AFY-009 processed_transcript Homo_sapiens 0 994
ENST00000513210 H2AFY-016 processed_transcript Homo_sapiens 0 682
ENST00000513268 H2AFY-018 retained_intron Homo_sapiens 2e-31 139
ENST00000624272 C5orf66-005 antisense Homo_sapiens 0 235

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