C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor III A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000146511 Gtf3a-001 ENSMUSG00000016503 10090 + 5:146948657-146955614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000146511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000146511 22.057±8.68 52.368±43.92 16.068±1.96 13.631±7.02 54.621±30.91 17.653±6.68 6.300±1.02 26.962±10.76 13.889±6.46 16.859±16.59 10.413±0.82 49.400±38.25 19.202±8.75 3.703±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MH CIL_0004MH_0002 CGP 5:146845071-146955614
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0000G7 CIL_0000G7_0003 CGP 5:146948657-146963800

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000381140 GTF3A-001 protein_coding Homo_sapiens 0 863
ENST00000416942 GTF3AP1-001 processed_pseudogene Homo_sapiens 0 213
ENST00000419181 GTF3A-002 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000432585 GTF3AP6-001 processed_pseudogene Homo_sapiens 0 254
ENST00000435781 GTF3A-004 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000438571 GTF3A-005 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000439403 GTF3A-201 protein_coding Homo_sapiens 0 848
ENST00000466776 GTF3A-006 processed_transcript Homo_sapiens 0 377
ENST00000470606 GTF3A-003 processed_transcript Homo_sapiens 0 691
ENST00000493903 GTF3A-008 processed_transcript Homo_sapiens 0 490

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