C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysosomal-associated membrane protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016534 Lamp2 10090 - X:38401357-38456454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016678 Lamp2-001 38405062-38456454 protein_coding
  ENSMUST00000061755 Lamp2-002 38419507-38456454 protein_coding
  ENSMUST00000074913 Lamp2-003 38401357-38456454 protein_coding
  ENSMUST00000136817 Lamp2-004 38429882-38443150 retained_intron
  ENSMUST00000144663 Lamp2-005 38452890-38456414 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016678ENSMUST00000061755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016678 22.670±4.16 17.989±8.24 27.031±1.90 N/A 21.739±3.91 16.488±2.74 8.673±0.22 148.818±20.05 66.766±49.08 22.260±5.99 6.563±0.70 18.978±15.71 43.372±24.52 14.100±6.30
ENSMUST00000061755 54.097±16.39 21.402±5.13 54.422±0.03 10.416±5.33 38.970±3.29 15.824±4.08 30.387±4.89 61.400±8.28 50.840±27.66 55.931±1.97 12.599±1.10 39.044±8.14 31.168±17.47 6.253±2.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Y CIL_00016Y_0003 CGP X:38316184-38456454
CIL_00016X CIL_00016X_0003 CGP X:38401357-38576196

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005764 ISO lysosome
GO:0005765 IDA lysosomal membrane
GO:0005770 IDA late endosome
GO:0005886 IEA plasma membrane
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IEA enzyme binding
GO:0019904 IPI protein domain specific binding
GO:0030670 IMP phagocytic vesicle membrane
GO:0031088 IEA platelet dense granule membrane
GO:0031902 IDA late endosome membrane
GO:0050821 IMP protein stabilization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014914 lamp2 lysosomal membrane glycoprotein 2 protein_coding Danio_rerio
ENSG00000005893 LAMP2 lysosomal-associated membrane protein 2 protein_coding Homo_sapiens

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