C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysosomal-associated membrane protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061755 Lamp2-002 ENSMUSG00000016534 10090 - X:38419507-38456454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061755 54.097±16.39 21.402±5.13 54.422±0.03 10.416±5.33 38.970±3.29 15.824±4.08 30.387±4.89 61.400±8.28 50.840±27.66 55.931±1.97 12.599±1.10 39.044±8.14 31.168±17.47 6.253±2.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Y CIL_00016Y_0003 CGP X:38316184-38456454
CIL_00016X CIL_00016X_0003 CGP X:38401357-38576196

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 ISO lysosome
GO:0005765 IDA lysosomal membrane
GO:0005770 IDA late endosome
GO:0005886 IEA plasma membrane
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0019904 IPI protein domain specific binding
GO:0030670 IMP phagocytic vesicle membrane
GO:0031902 IDA late endosome membrane
GO:0050821 IMP protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000200639 LAMP2-001 protein_coding Homo_sapiens 0 562
ENST00000371335 LAMP2-002 protein_coding Homo_sapiens 0 874
ENST00000434600 LAMP2-004 protein_coding Homo_sapiens 0 564
ENST00000486593 LAMP2-003 nonsense_mediated_decay Homo_sapiens 0 675

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