C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysosomal-associated membrane protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005893 LAMP2 9606 - X:120427827-120469365 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000200639 LAMP2-001 120430826-120469306 protein_coding
  ENST00000371335 LAMP2-002 120436494-120469306 protein_coding
  ENST00000434600 LAMP2-004 120427827-120469365 protein_coding
  ENST00000486593 LAMP2-003 120431248-120449068 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000200639ENST00000371335ENST00000434600ENST00000486593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000200639 13.241±0.00 10.886±0.00 10.995±0.00 9.009±0.00 8.784±3.59 9.160±4.62 3.548±1.90 24.832±0.79 16.428±10.61 15.647±0.25 3.047±0.00 15.720±1.57 15.438±7.71 N/A
ENST00000371335 18.293±0.00 11.917±0.00 2.949±0.00 43.611±33.58 13.147±6.14 8.894±4.72 5.853±3.44 11.937±6.98 8.129±3.07 12.373±4.31 19.152±13.89 13.216±1.88 8.491±0.99 9.160±5.09
ENST00000434600 N/A N/A 5.505±0.00 10.851±0.00 3.639±0.00 3.944±0.00 1.915±0.00 4.582±0.00 N/A N/A 2.274±0.00 N/A N/A N/A
ENST00000486593 N/A N/A 13.621±0.00 N/A N/A N/A N/A N/A N/A N/A 8.213±0.00 13.975±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Y CIL_00016Y_0002 CGP X:120362085-120469365
CIL_00016X CIL_00016X_0002 CGP X:120427827-120575794

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005770 IDA late endosome
GO:0005886 TAS plasma membrane
GO:0007596 TAS blood coagulation
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0019904 IEA protein domain specific binding
GO:0030168 TAS platelet activation
GO:0030670 IEA phagocytic vesicle membrane
GO:0031088 IDA platelet dense granule membrane
GO:0031902 IDA late endosome membrane
GO:0050821 ISS protein stabilization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014914 lamp2 lysosomal membrane glycoprotein 2 protein_coding Danio_rerio
ENSMUSG00000016534 Lamp2 lysosomal-associated membrane protein 2 protein_coding Mus_musculus

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