C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076060 Scube1-001 ENSMUSG00000016763 10090 - 15:83606506-83725021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076060
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076060 5.229±5.19 2.181±0.55 0.778±0.36 2.615±0.51 0.179±0.06 0.547±0.10 0.031±0.02 3.005±0.98 0.039±0.02 3.565±1.27 0.511±0.29 0.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004UW CIL_0004UW_0002 CGP 15:83575119-83725021
CIL_0004UX CIL_0004UX_0002 CGP 15:83602583-83858494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290460 SCUBE1-003 protein_coding Homo_sapiens 0 1031
ENST00000360835 SCUBE1-001 protein_coding Homo_sapiens 0 3520
ENST00000449304 SCUBE1-009 protein_coding Homo_sapiens 0 287
ENST00000461595 SCUBE1-006 processed_transcript Homo_sapiens 0 202
ENST00000480833 SCUBE1-005 processed_transcript Homo_sapiens 0 200
ENST00000615096 SCUBE1-201 protein_coding Homo_sapiens 0 1391

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