C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016907 Scube1-002 ENSMUSG00000016763 10090 - 15:83606506-83725021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016907
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016907 6.968±6.98 1.737±1.01 1.807±0.58 0.706±0.31 1.278±0.33 0.300±0.09 0.361±0.15 0.034±0.00 1.782±0.47 0.069±0.03 4.182±1.15 0.820±0.82 0.220±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004UW CIL_0004UW_0002 CGP 15:83575119-83725021
CIL_0004UX CIL_0004UX_0002 CGP 15:83602583-83858494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005615 IEA extracellular space
GO:0009897 ISS external side of plasma membrane
GO:0009986 ISS cell surface
GO:0019897 IEA extrinsic component of plasma membrane
GO:0042802 IEA identical protein binding
GO:0046982 ISS protein heterodimerization activity
GO:0051260 ISS protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290460 SCUBE1-003 protein_coding Homo_sapiens 0 1325
ENST00000360835 SCUBE1-001 protein_coding Homo_sapiens 0 2532
ENST00000449304 SCUBE1-009 protein_coding Homo_sapiens 0 719
ENST00000461595 SCUBE1-006 processed_transcript Homo_sapiens 0 202
ENST00000480833 SCUBE1-005 processed_transcript Homo_sapiens 0 200
ENST00000615096 SCUBE1-201 protein_coding Homo_sapiens 0 1013

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