C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043634 Scube1-003 ENSMUSG00000016763 10090 - 15:83605003-83725021 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000043634
Transcript ID Muscle
ENSMUST00000043634 0.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004UW CIL_0004UW_0002 CGP 15:83575119-83725021
CIL_0004UX CIL_0004UX_0002 CGP 15:83602583-83858494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290460 SCUBE1-003 protein_coding Homo_sapiens 0 664
ENST00000360835 SCUBE1-001 protein_coding Homo_sapiens 0 2531
ENST00000461595 SCUBE1-006 processed_transcript Homo_sapiens 0 202
ENST00000480833 SCUBE1-005 processed_transcript Homo_sapiens 0 200
ENST00000615096 SCUBE1-201 protein_coding Homo_sapiens 0 645

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