C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: recombination signal binding protein for immunoglobulin kappa J region-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017007 Rbpjl 10090 + 2:164403141-164415448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017151 Rbpjl-001 164403194-164415448 protein_coding
  ENSMUST00000109356 Rbpjl-003 164403209-164411338 processed_transcript
  ENSMUST00000137427 Rbpjl-002 164403141-164414791 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017151ENSMUST00000109356ENSMUST00000137427
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017151 N/A N/A 5.810±0.34 N/A N/A 0.034±0.02 20.705±2.35 0.067±0.00 0.050±0.03 N/A 0.021±0.00
ENSMUST00000109356 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A
ENSMUST00000137427 0.087±0.00 0.164±0.11 1.125±0.59 0.026±0.00 0.054±0.00 0.022±0.01 9.804±3.48 0.020±0.00 0.019±0.00 0.021±0.00 0.031±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V4 CIL_0003V4_0002 CGP 2:164354070-164405160
CIL_0003L4 CIL_0003L4_0002 CGP 2:164389393-164415448
CIL_0003L5 CIL_0003L5_0002 CGP 2:164403141-164443887

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074148 rbpjl recombination signal binding protein for immunoglobulin kappa J region-like protein_coding Danio_rerio
ENSG00000124232 RBPJL recombination signal binding protein for immunoglobulin kappa J region-like protein_coding Homo_sapiens

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