C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: recombination signal binding protein for immunoglobulin kappa J region-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017151 Rbpjl-001 ENSMUSG00000017007 10090 + 2:164403194-164415448 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverLungMuscleOvaryTestisENSMUST00000017151
Transcript ID Colon Liver Lung Muscle Ovary Testis
ENSMUST00000017151 5.810±0.34 0.034±0.02 20.705±2.35 0.067±0.00 0.050±0.03 0.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V4 CIL_0003V4_0002 CGP 2:164354070-164405160
CIL_0003L4 CIL_0003L4_0002 CGP 2:164389393-164415448
CIL_0003L5 CIL_0003L5_0002 CGP 2:164403141-164443887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0045893 IDA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343694 RBPJL-002 protein_coding Homo_sapiens 0 1681
ENST00000372741 RBPJL-003 protein_coding Homo_sapiens 0 1635
ENST00000372743 RBPJL-001 protein_coding Homo_sapiens 0 1661
ENST00000464504 RBPJL-004 protein_coding Homo_sapiens 0 466
ENST00000622729 RBPJL-005 retained_intron Homo_sapiens 0 579

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