C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho family GTPase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017144 Rnd3 10090 - 2:51130438-51149111 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000017288 Rnd3-001 51130438-51149111 protein_coding
  ENSMUST00000140864 Rnd3-003 51137069-51149094 retained_intron
  ENSMUST00000154545 Rnd3-002 51131835-51149110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017288ENSMUST00000140864ENSMUST00000154545
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017288 3.361±0.46 1.606±0.34 17.664±3.59 21.344±11.38 2.468±1.02 3.367±0.52 2.118±0.52 1.776±0.34 3.008±1.26 2.901±1.14 1.335±0.21 3.422±4.01 7.995±3.03 0.739±0.33
ENSMUST00000140864 N/A N/A N/A N/A 0.960±0.00 N/A N/A N/A 1.221±0.00 N/A N/A 1.506±0.00 N/A 0.501±0.00
ENSMUST00000154545 N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DZ CIL_0007DZ_0002 CGP 2:50279881-51149111
CIL_0008JE CIL_0008JE_0002 VISTA 2:50669347-51272438

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005794 IEA Golgi apparatus
GO:0005925 IEA focal adhesion
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007396 rnd3b Rho family GTPase 3b protein_coding Danio_rerio
ENSDARG00000076799 rnd3a Rho family GTPase 3a protein_coding Danio_rerio
ENSG00000115963 RND3 Rho family GTPase 3 protein_coding Homo_sapiens

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