C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho family GTPase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017288 Rnd3-001 ENSMUSG00000017144 10090 - 2:51130438-51149111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017288 3.361±0.46 1.606±0.34 17.664±3.59 21.344±11.38 2.468±1.02 3.367±0.52 2.118±0.52 1.776±0.34 3.008±1.26 2.901±1.14 1.335±0.21 3.422±4.01 7.995±3.03 0.739±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DZ CIL_0007DZ_0002 CGP 2:50279881-51149111
CIL_0008JE CIL_0008JE_0002 VISTA 2:50669347-51272438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005794 IEA Golgi apparatus
GO:0005925 IEA focal adhesion
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263895 RND3-001 protein_coding Homo_sapiens 0 1149
ENST00000375734 RND3-002 protein_coding Homo_sapiens 0 1273
ENST00000409557 RND3-007 protein_coding Homo_sapiens 0 717
ENST00000439275 RND3-003 protein_coding Homo_sapiens 0 584
ENST00000454202 RND3-004 protein_coding Homo_sapiens 0 582
ENST00000466334 RND3-008 retained_intron Homo_sapiens 0 364
ENST00000472416 RND3-005 processed_transcript Homo_sapiens 0 451
ENST00000473639 RND3-009 retained_intron Homo_sapiens 0 318
ENST00000497865 RND3-006 retained_intron Homo_sapiens 0 854

Loading