C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008JE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1386 VISTA 9606 2:150026360-150628958
GeneTranscriptPositionBiotype
ENSG00000115963 (RND3)
Rho family GTPase 3 		ENST00000263895 (RND3-001) 150468195-150487694 protein_coding
ENST00000375734 (RND3-002) 150468195-150487667 protein_coding
ENST00000409557 (RND3-007) 150468209-150485382 protein_coding
ENST00000439275 (RND3-003) 150474875-150539011 protein_coding
ENST00000454202 (RND3-004) 150474875-150487729 protein_coding
ENST00000466334 (RND3-008) 150470219-150475104 retained_intron
ENST00000472416 (RND3-005) 150471638-150487100 processed_transcript
ENST00000473639 (RND3-009) 150470141-150471960 retained_intron
ENST00000497865 (RND3-006) 150469777-150486866 retained_intron
ENSG00000230645 (AC016682.1)
 ENST00000437118 (AC016682.1-001) 150171423-150301080 lincRNA
ENSG00000231420 (AC113610.1)
 ENST00000429317 (AC113610.1-001) 150234892-150257007 lincRNA
ENSG00000232359 (AC104777.1)
 ENST00000421624 (AC104777.1-001) 150595102-150620067 lincRNA
ENSG00000236049 (AC104777.2)
 ENST00000441356 (AC104777.2-001) 150552532-150572221 lincRNA
ENSG00000237220 (AC104777.3)
 ENST00000416350 (AC104777.3-001) 150566134-150568080 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008JE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1386 VISTA 10090 2:50669347-51272438
GeneTranscriptPositionBiotype
ENSMUSG00000017144 (Rnd3)
Rho family GTPase 3 		ENSMUST00000017288 (Rnd3-001) 51130438-51149111 protein_coding
ENSMUST00000140864 (Rnd3-003) 51137069-51149094 retained_intron
ENSMUST00000154545 (Rnd3-002) 51131835-51149110 protein_coding
ENSMUSG00000081173 (Gm13500)
predicted gene 13500 		ENSMUST00000119348 (Gm13500-001) 51231987-51232810 processed_pseudogene
ENSMUSG00000083270 (Gm13498)
predicted gene 13498 		ENSMUST00000119159 (Gm13498-001) 50909684-50911849 processed_pseudogene
ENSMUSG00000086349 (Gm13497)
predicted gene 13497 		ENSMUST00000139497 (Gm13497-001) 51241831-51295945 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008JE_0001ENSG00000115963ENST00000263895ENST00000375734ENST00000409557ENST00000439275ENST00000454202ENST00000466334ENST00000472416ENST00000473639ENST00000497865ENSG00000230645ENST00000437118ENSG00000231420ENST00000429317ENSG00000232359ENST00000421624ENSG00000236049ENST00000441356ENSG00000237220ENST00000416350CIL_0008JE_0002ENSMUSG00000017144ENSMUST00000017288ENSMUST00000140864ENSMUST00000154545ENSMUSG00000081173ENSMUST00000119348ENSMUSG00000083270ENSMUST00000119159ENSMUSG00000086349ENSMUST00000139497
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008JE_0001ENSG00000115963ENST00000263895ENST00000375734ENST00000409557ENST00000473639ENST00000497865ENSG00000230645ENST00000437118ENSG00000231420ENST00000429317ENSG00000232359ENST00000421624ENSG00000236049ENST00000441356ENSG00000237220ENST00000416350CIL_0008JE_0002ENSMUSG00000017144ENSMUST00000017288ENSMUST00000140864ENSMUST00000154545ENSMUSG00000081173ENSMUST00000119348ENSMUSG00000083270ENSMUST00000119159ENSMUSG00000086349ENSMUST00000139497
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115963 ENST00000263895 25.508±0.00 9.005±0.00 N/A 1.894±0.00 10.784±7.97 8.268±0.00 8.260±0.00 3.824±0.77 4.540±1.76 9.327±7.25 1.378±0.06 5.145±2.78 8.117±3.98 2.718±0.00
ENST00000375734 N/A N/A N/A 1.781±0.00 5.955±0.00 4.431±0.00 2.253±0.00 7.037±0.00 4.209±0.00 1.787±0.00 0.841±0.27 8.152±3.08 5.527±4.00 1.021±0.00
ENST00000409557 N/A 2.512±0.00 N/A N/A N/A N/A N/A N/A 4.165±0.00 N/A N/A 7.258±2.97 6.567±5.59 1.388±0.00
ENST00000439275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.587±0.00 N/A N/A N/A
ENST00000497865 N/A N/A N/A 3.662±0.00 N/A 5.105±0.00 3.309±0.00 N/A 6.161±0.00 N/A N/A 19.330±10.39 25.183±0.00 4.265±0.00
ENSG00000230645 ENST00000437118 N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A 0.267±0.00
ENSG00000231420 ENST00000429317 N/A N/A N/A N/A N/A N/A 0.038±0.00 0.590±0.00 N/A N/A N/A N/A 0.073±0.00 0.075±0.00
ENSG00000232359 ENST00000421624 N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236049 ENST00000441356 N/A N/A N/A N/A 0.005±0.00 N/A N/A 0.195±0.00 0.012±0.00 N/A N/A N/A N/A 0.043±0.00
ENSG00000237220 ENST00000416350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017144 ENSMUST00000017288 3.361±0.46 1.606±0.34 17.664±3.59 21.344±11.38 2.468±1.02 3.367±0.52 2.118±0.52 1.776±0.34 3.008±1.26 2.901±1.14 1.335±0.21 3.422±4.01 7.995±3.03 0.739±0.33
ENSMUST00000140864 N/A N/A N/A N/A 0.960±0.00 N/A N/A N/A 1.221±0.00 N/A N/A 1.506±0.00 N/A 0.501±0.00
ENSMUST00000154545 N/A N/A N/A N/A 0.341±0.00 N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A
ENSMUSG00000081173 ENSMUST00000119348 N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.02 N/A
ENSMUSG00000083270 ENSMUST00000119159 0.020±0.00 N/A 0.006±0.00 0.006±0.00 N/A N/A N/A 0.030±0.01 N/A N/A N/A 0.014±0.00 0.011±0.00 0.070±0.05
ENSMUSG00000086349 ENSMUST00000139497 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A

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