C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 53 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017288 Vps53 10090 - 11:76046226-76179647 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056601 Vps53-001 76046226-76179647 protein_coding
  ENSMUST00000094015 Vps53-013 76046297-76179617 protein_coding
  ENSMUST00000108419 Vps53-014 76046296-76179624 protein_coding
  ENSMUST00000129256 Vps53-002 76176959-76179638 protein_coding
  ENSMUST00000140886 Vps53-003 76170514-76179612 processed_transcript
  ENSMUST00000141773 Vps53-004 76121568-76138748 processed_transcript
  ENSMUST00000143163 Vps53-006 76062041-76092679 retained_intron
  ENSMUST00000143459 Vps53-005 76134432-76154969 processed_transcript
  ENSMUST00000163878 Vps53-010 76117059-76179532 nonsense_mediated_decay
  ENSMUST00000166084 Vps53-011 76121563-76175792 processed_transcript
  ENSMUST00000166436 Vps53-009 76117674-76166201 protein_coding
  ENSMUST00000166752 Vps53-015 76062985-76179499 nonsense_mediated_decay
  ENSMUST00000167114 Vps53-016 76062980-76179499 protein_coding
  ENSMUST00000169734 Vps53-012 76062985-76179516 nonsense_mediated_decay
  ENSMUST00000170143 Vps53-008 76121447-76179587 retained_intron
  ENSMUST00000170730 Vps53-007 76136199-76179634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000056601ENSMUST00000094015ENSMUST00000108419ENSMUST00000167114
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000056601 N/A N/A 13.307±0.37 16.919±8.61 N/A N/A N/A 8.722±0.44 6.285±1.05 N/A 6.232±0.60 14.750±0.78 19.578±6.72
ENSMUST00000094015 6.493±0.00 N/A N/A N/A 6.036±1.40 N/A 3.715±0.89 N/A 5.199±0.13 4.755±0.00 N/A N/A N/A
ENSMUST00000108419 7.872±0.00 7.955±0.75 N/A N/A 6.853±0.74 14.831±3.67 N/A 7.410±0.51 5.968±0.00 4.997±0.00 N/A 9.578±1.54 N/A
ENSMUST00000167114 N/A 9.880±0.65 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0003 CGP 11:76019194-76179647

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000938 IEA GARP complex
GO:0005515 IEA protein binding
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069324 vps53 vacuolar protein sorting 53 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000141252 VPS53 vacuolar protein sorting 53 homolog (S. cerevisiae) protein_coding Homo_sapiens

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