C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107565 Plxdc1-003 ENSMUSG00000017417 10090 - 11:97923656-97986399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107565
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107565 0.593±0.32 1.946±0.48 1.495±0.00 0.829±0.37 0.475±0.05 0.896±0.12 0.100±0.05 0.125±0.04 2.257±0.09 0.307±0.00 1.202±0.48 0.062±0.04 7.601±5.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y8 CIL_0005Y8_0002 CGP 11:97853826-97986444
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_0006QJ CIL_0006QJ_0002 CGP 11:97923238-97996181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 ISO plasma membrane
GO:0005923 IEA tight junction
GO:0016021 IEA integral component of membrane
GO:0021510 IEA spinal cord development
GO:0030425 IEA dendrite
GO:0043025 IEA neuronal cell body
GO:0043235 ISO receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315392 PLXDC1-001 protein_coding Homo_sapiens 0 1341
ENST00000394318 PLXDC1-009 retained_intron Homo_sapiens 0 811
ENST00000415163 PLXDC1-004 protein_coding Homo_sapiens 0 436
ENST00000441877 PLXDC1-003 protein_coding Homo_sapiens 0 671
ENST00000444911 PLXDC1-008 protein_coding Homo_sapiens 0 1275
ENST00000461225 PLXDC1-002 retained_intron Homo_sapiens 0 704
ENST00000493200 PLXDC1-005 processed_transcript Homo_sapiens 0 749
ENST00000577838 PLXDC1-015 processed_transcript Homo_sapiens 0 501
ENST00000578277 PLXDC1-018 retained_intron Homo_sapiens 0 215
ENST00000578390 PLXDC1-010 nonsense_mediated_decay Homo_sapiens 0 808
ENST00000578517 PLXDC1-007 retained_intron Homo_sapiens 0 791
ENST00000578808 PLXDC1-013 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000579190 PLXDC1-011 protein_coding Homo_sapiens 0 324
ENST00000579279 PLXDC1-020 protein_coding Homo_sapiens 0 316
ENST00000579417 PLXDC1-017 retained_intron Homo_sapiens 8.99998e-41 171
ENST00000580667 PLXDC1-019 processed_transcript Homo_sapiens 0 261

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