C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plexin domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000017561 Plxdc1-001 ENSMUSG00000017417 10090 - 11:97923238-97986444 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000017561
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000017561 1.928±0.76 3.585±1.00 2.055±0.26 0.623±0.61 1.775±0.58 0.902±0.22 2.014±0.51 0.331±0.09 0.294±0.16 8.113±1.52 1.453±0.45 3.227±1.47 0.238±0.26 8.411±6.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Y8 CIL_0005Y8_0002 CGP 11:97853826-97986444
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_0006QJ CIL_0006QJ_0002 CGP 11:97923238-97996181

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 ISO plasma membrane
GO:0005923 IEA tight junction
GO:0016021 IEA integral component of membrane
GO:0043235 ISO receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315392 PLXDC1-001 protein_coding Homo_sapiens 0 1434
ENST00000394318 PLXDC1-009 retained_intron Homo_sapiens 0 902
ENST00000415163 PLXDC1-004 protein_coding Homo_sapiens 0 529
ENST00000441877 PLXDC1-003 protein_coding Homo_sapiens 0 763
ENST00000444911 PLXDC1-008 protein_coding Homo_sapiens 0 1275
ENST00000461225 PLXDC1-002 retained_intron Homo_sapiens 0 797
ENST00000493200 PLXDC1-005 processed_transcript Homo_sapiens 0 747
ENST00000577838 PLXDC1-015 processed_transcript Homo_sapiens 0 501
ENST00000578277 PLXDC1-018 retained_intron Homo_sapiens 0 215
ENST00000578390 PLXDC1-010 nonsense_mediated_decay Homo_sapiens 0 898
ENST00000578517 PLXDC1-007 retained_intron Homo_sapiens 0 883
ENST00000578808 PLXDC1-013 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000579190 PLXDC1-011 protein_coding Homo_sapiens 0 416
ENST00000579279 PLXDC1-020 protein_coding Homo_sapiens 0 316
ENST00000579417 PLXDC1-017 retained_intron Homo_sapiens 8.99998e-41 171
ENST00000580667 PLXDC1-019 processed_transcript Homo_sapiens 0 353

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