C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tocopherol (alpha) transfer protein-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017679 Ttpal 10090 + 2:163602314-163619013 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109405 Ttpal-001 163602351-163619013 nonsense_mediated_decay
  ENSMUST00000109408 Ttpal-002 163602322-163616500 protein_coding
  ENSMUST00000132904 Ttpal-006 163611520-163615426 retained_intron
  ENSMUST00000144729 Ttpal-003 163602349-163612853 retained_intron
  ENSMUST00000152135 Ttpal-005 163602349-163607291 protein_coding
  ENSMUST00000156839 Ttpal-004 163602563-163611897 protein_coding
  ENSMUST00000171696 Ttpal-201 163602314-163619012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109405ENSMUST00000109408ENSMUST00000156839ENSMUST00000171696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109405 N/A N/A 2.923±0.37 2.544±0.25 N/A N/A N/A N/A 1.097±0.19 N/A 0.625±0.00 N/A 1.849±0.63 0.256±0.02
ENSMUST00000109408 2.037±0.36 7.692±1.31 N/A 2.661±0.00 7.935±2.89 4.420±0.52 1.602±0.03 1.343±0.09 1.219±0.35 4.383±1.48 N/A 6.052±1.92 3.850±1.15 N/A
ENSMUST00000156839 N/A 6.619±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171696 4.121±1.29 3.807±0.35 4.612±1.10 6.760±0.50 4.555±2.07 2.878±1.07 2.117±0.11 2.323±0.46 1.763±0.70 5.540±0.40 0.732±0.25 3.680±1.68 3.936±0.87 0.455±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R9 CIL_0007R9_0002 VISTA 2:163385776-163987192
CIL_0002B3 CIL_0002B3_0002 CGP 2:163506808-163619013
CIL_0002SO CIL_0002SO_0002 CGP 2:163602314-163645131

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005215 IEA transporter activity
GO:0005622 IEA intracellular
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070644 ttpal tocopherol (alpha) transfer protein-like protein_coding Danio_rerio
ENSG00000124120 TTPAL tocopherol (alpha) transfer protein-like protein_coding Homo_sapiens

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