C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002B3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000021494-ENSDARG00000070644 CGP 7955 23:26120028-26162216
GeneTranscriptPositionBiotype
ENSDARG00000021494 (hnf4a)
hepatocyte nuclear factor 4, alpha 		ENSDART00000028236 (hnf4a-201) 26143980-26153189 protein_coding
ENSDART00000124103 (hnf4a-002) 26143968-26151305 nonsense_mediated_decay
ENSDART00000138272 (hnf4a-004) 26148737-26149636 processed_transcript
ENSDART00000138907 (hnf4a-005) 26120028-26148867 protein_coding
ENSDART00000139049 (hnf4a-003) 26144009-26144622 retained_intron
ENSDART00000145426 (hnf4a-001) 26143880-26153195 protein_coding
ENSDARG00000070644 (ttpal)
tocopherol (alpha) transfer protein-like 		ENSDART00000103934 (ttpal-001) 26155976-26162216 protein_coding
ENSDART00000146729 (ttpal-002) 26156713-26159140 retained_intron
CIL_0002B3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017950-ENSMUSG00000017679 CGP 10090 2:163506808-163619013
GeneTranscriptPositionBiotype
ENSMUSG00000017679 (Ttpal)
tocopherol (alpha) transfer protein-like 		ENSMUST00000109405 (Ttpal-001) 163602351-163619013 nonsense_mediated_decay
ENSMUST00000109408 (Ttpal-002) 163602322-163616500 protein_coding
ENSMUST00000132904 (Ttpal-006) 163611520-163615426 retained_intron
ENSMUST00000144729 (Ttpal-003) 163602349-163612853 retained_intron
ENSMUST00000152135 (Ttpal-005) 163602349-163607291 protein_coding
ENSMUST00000156839 (Ttpal-004) 163602563-163611897 protein_coding
ENSMUST00000171696 (Ttpal-201) 163602314-163619012 protein_coding
ENSMUSG00000017950 (Hnf4a)
hepatic nuclear factor 4, alpha 		ENSMUST00000018094 (Hnf4a-201) 163547188-163572905 protein_coding
ENSMUST00000109411 (Hnf4a-001) 163547187-163572910 protein_coding
ENSMUST00000131658 (Hnf4a-003) 163546817-163559110 processed_transcript
ENSMUST00000137449 (Hnf4a-004) 163550083-163559109 protein_coding
ENSMUST00000143911 (Hnf4a-002) 163506808-163552635 protein_coding
ENSMUSG00000046840 (Hnf4aos)
hepatic nuclear factor 4 alpha, opposite strand 		ENSMUST00000125811 (Hnf4aos-001) 163494194-163541692 antisense
ENSMUST00000128896 (Hnf4aos-003) 163493807-163541720 antisense
ENSMUST00000141329 (Hnf4aos-002) 163493807-163541720 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002B3_0001ENSDARG00000021494ENSDART00000028236ENSDART00000124103ENSDART00000138272ENSDART00000138907ENSDART00000139049ENSDART00000145426ENSDARG00000070644ENSDART00000103934ENSDART00000146729CIL_0002B3_0002ENSMUSG00000017679ENSMUST00000109405ENSMUST00000109408ENSMUST00000132904ENSMUST00000144729ENSMUST00000152135ENSMUST00000156839ENSMUST00000171696ENSMUSG00000017950ENSMUST00000018094ENSMUST00000109411ENSMUST00000131658ENSMUST00000137449ENSMUST00000143911ENSMUSG00000046840ENSMUST00000125811ENSMUST00000128896ENSMUST00000141329
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002B3_0001ENSDARG00000021494ENSDART00000028236ENSDART00000124103ENSDART00000138272ENSDART00000138907ENSDART00000139049ENSDART00000145426ENSDARG00000070644ENSDART00000103934CIL_0002B3_0002ENSMUSG00000017679ENSMUST00000109405ENSMUST00000109408ENSMUST00000156839ENSMUST00000171696ENSMUSG00000017950ENSMUST00000018094ENSMUST00000109411ENSMUST00000143911ENSMUSG00000046840ENSMUST00000125811ENSMUST00000128896ENSMUST00000141329
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021494 ENSDART00000028236 N/A N/A N/A 0.041±0.01 N/A N/A 0.532±0.15 19.084±8.64 9.719±0.00 N/A 0.242±0.00 N/A N/A N/A
ENSDART00000124103 N/A N/A N/A N/A N/A N/A N/A 4.489±0.00 5.460±0.00 N/A N/A N/A N/A N/A
ENSDART00000138272 N/A N/A N/A 0.324±0.20 N/A N/A 0.659±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138907 N/A N/A N/A 0.186±0.00 N/A N/A 0.060±0.00 N/A N/A N/A 0.785±0.00 N/A N/A N/A
ENSDART00000139049 N/A N/A N/A 1.266±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145426 N/A N/A N/A 0.414±0.00 N/A N/A 0.361±0.00 N/A 2.635±0.00 N/A 0.811±0.00 N/A N/A N/A
ENSDARG00000070644 ENSDART00000103934 N/A N/A N/A 6.480±2.10 N/A N/A 4.720±3.22 3.938±2.30 0.026±0.00 N/A 0.919±0.00 N/A N/A N/A
ENSDART00000146729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017679 ENSMUST00000109405 N/A N/A 2.923±0.37 2.544±0.25 N/A N/A N/A N/A 1.097±0.19 N/A 0.625±0.00 N/A 1.849±0.63 0.256±0.02
ENSMUST00000109408 2.037±0.36 7.692±1.31 N/A 2.661±0.00 7.935±2.89 4.420±0.52 1.602±0.03 1.343±0.09 1.219±0.35 4.383±1.48 N/A 6.052±1.92 3.850±1.15 N/A
ENSMUST00000132904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156839 N/A 6.619±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171696 4.121±1.29 3.807±0.35 4.612±1.10 6.760±0.50 4.555±2.07 2.878±1.07 2.117±0.11 2.323±0.46 1.763±0.70 5.540±0.40 0.732±0.25 3.680±1.68 3.936±0.87 0.455±0.15
ENSMUSG00000017950 ENSMUST00000018094 0.014±0.01 0.055±0.02 N/A 0.004±0.00 0.155±0.17 153.134±21.16 0.017±0.00 148.276±12.61 75.813±58.43 0.108±0.05 0.010±0.00 0.142±0.04 18.480±11.50 0.021±0.00
ENSMUST00000109411 0.014±0.01 0.024±0.01 N/A 0.003±0.00 0.081±0.07 N/A 0.017±0.00 N/A 11.242±7.50 0.098±0.04 0.010±0.00 0.101±0.04 2.889±2.54 0.020±0.00
ENSMUST00000131658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143911 0.104±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A 0.778±0.08 N/A N/A
ENSMUSG00000046840 ENSMUST00000125811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A
ENSMUST00000128896 N/A N/A N/A N/A N/A N/A N/A 2.643±0.01 N/A N/A N/A 0.249±0.14 N/A N/A
ENSMUST00000141329 N/A N/A N/A N/A N/A 0.126±0.00 N/A 13.030±1.79 4.236±4.01 N/A N/A 0.205±0.11 0.374±0.12 0.069±0.00

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