C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tocopherol (alpha) transfer protein-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109405 Ttpal-001 ENSMUSG00000017679 10090 + 2:163602351-163619013 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMusclePlacentaTestisENSMUST00000109405
Transcript ID Bladder Brain Liver Muscle Placenta Testis
ENSMUST00000109405 2.923±0.37 2.544±0.25 1.097±0.19 0.625±0.00 1.849±0.63 0.256±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R9 CIL_0007R9_0002 VISTA 2:163385776-163987192
CIL_0002B3 CIL_0002B3_0002 CGP 2:163506808-163619013
CIL_0002SO CIL_0002SO_0002 CGP 2:163602314-163645131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005215 IEA transporter activity
GO:0005622 IEA intracellular
GO:0006810 IEA transport
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262605 TTPAL-002 protein_coding Homo_sapiens 0 556
ENST00000372904 TTPAL-001 protein_coding Homo_sapiens 0 496
ENST00000372906 TTPAL-005 protein_coding Homo_sapiens 0 496
ENST00000456317 TTPAL-004 protein_coding Homo_sapiens 0 556

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