C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: karyopherin (importin) alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018362 Kpna2 10090 - 11:106988629-106999541 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018506 Kpna2-001 106988629-106999541 protein_coding
  ENSMUST00000106768 Kpna2-005 106996215-106999369 protein_coding
  ENSMUST00000124541 Kpna2-003 106991918-106998487 protein_coding
  ENSMUST00000140362 Kpna2-002 106991918-106998779 protein_coding
  ENSMUST00000144834 Kpna2-004 106991938-106999450 protein_coding
  ENSMUST00000145331 Kpna2-007 106988629-106999440 nonsense_mediated_decay
  ENSMUST00000156495 Kpna2-006 106991618-106992627 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018506ENSMUST00000106768ENSMUST00000140362ENSMUST00000145331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018506 12.232±7.06 11.769±5.81 12.861±1.09 36.501±28.70 8.503±6.13 38.192±16.25 17.367±1.49 6.781±4.04 43.431±48.56 12.643±5.73 4.359±0.91 11.824±7.87 32.388±21.81 69.246±33.04
ENSMUST00000106768 N/A N/A N/A 1.808±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.535±10.31 11.155±0.00
ENSMUST00000140362 N/A N/A N/A 7.103±0.00 N/A N/A N/A N/A N/A N/A N/A 34.448±0.00 30.326±23.35 46.812±0.00
ENSMUST00000145331 N/A N/A N/A N/A 4.710±1.21 N/A N/A N/A 4.018±0.10 N/A N/A 6.252±3.14 N/A 6.560±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XS CIL_0001XS_0002 CGP 11:106820066-106999541
CIL_0000KI CIL_0000KI_0002 CGP 11:106988629-107132127

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006606 IEA protein import into nucleus
GO:0008565 IEA protein transporter activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038066 kpna2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) protein_coding Danio_rerio
ENSG00000182481 KPNA2 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) protein_coding Homo_sapiens

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