C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid receptor associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018711 Gabarap-001 ENSMUSG00000018567 10090 + 11:69991143-69994951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018711 41.178±14.87 9.288±0.38 68.835±2.69 39.563±23.08 29.826±12.42 17.506±3.73 25.499±3.77 34.951±4.15 34.810±18.33 17.654±1.33 50.709±4.06 23.856±7.49 42.822±20.25 58.351±23.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033F CIL_00033F_0003 CGP 11:69981156-69994951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0000421 IEA autophagic vacuole membrane
GO:0005515 IPI protein binding
GO:0005764 IDA lysosome
GO:0005776 ISS autophagic vacuole
GO:0005790 IDA smooth endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005874 IEA microtubule
GO:0005875 IDA microtubule associated complex
GO:0005886 IDA plasma membrane
GO:0005930 IDA axoneme
GO:0006914 IEA autophagy
GO:0008017 IDA microtubule binding
GO:0008625 ISS extrinsic apoptotic signaling pathway via death domain receptors
GO:0015031 IEA protein transport
GO:0015629 IDA actin cytoskeleton
GO:0031410 IEA cytoplasmic vesicle
GO:0044297 IEA cell body
GO:0048471 IEA perinuclear region of cytoplasm
GO:0048487 IEA beta-tubulin binding
GO:0050811 IEA GABA receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302386 GABARAP-001 protein_coding Homo_sapiens 0 1103
ENST00000411645 RP11-6B6.3-001 processed_pseudogene Homo_sapiens 0 431
ENST00000570760 CTD-2545G14.7-001 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000570856 GABARAP-006 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000571129 GABARAP-004 protein_coding Homo_sapiens 0 560
ENST00000571253 GABARAP-003 protein_coding Homo_sapiens 0 424
ENST00000573928 GABARAP-002 protein_coding Homo_sapiens 0 569
ENST00000577035 GABARAP-005 protein_coding Homo_sapiens 0 769

Loading