C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid receptor associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144443 Gabarap-002 ENSMUSG00000018567 10090 + 11:69991684-69994935 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000144443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000144443 92.301±25.08 20.467±3.83 47.633±0.79 70.003±35.44 66.356±37.01 35.678±11.24 35.262±2.54 74.104±15.97 37.456±10.57 55.802±8.09 16.471±0.00 76.280±24.31 31.129±10.35 51.655±14.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033F CIL_00033F_0003 CGP 11:69981156-69994951

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302386 GABARAP-001 protein_coding Homo_sapiens 0 630
ENST00000411645 RP11-6B6.3-001 processed_pseudogene Homo_sapiens 0 239
ENST00000570760 CTD-2545G14.7-001 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000570856 GABARAP-006 nonsense_mediated_decay Homo_sapiens 0 449
ENST00000571129 GABARAP-004 protein_coding Homo_sapiens 0 440
ENST00000571253 GABARAP-003 protein_coding Homo_sapiens 0 303
ENST00000573928 GABARAP-002 protein_coding Homo_sapiens 0 300
ENST00000577035 GABARAP-005 protein_coding Homo_sapiens 0 630

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