C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid receptor associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108592 Gabarap-004 ENSMUSG00000018567 10090 + 11:69991639-69994940 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108592 133.797±24.52 187.435±41.65 98.028±32.14 72.169±43.97 221.531±87.78 122.999±26.90 150.512±6.23 298.477±71.62 137.928±75.90 189.013±48.04 52.793±6.11 167.576±70.57 83.155±44.47 190.881±93.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033F CIL_00033F_0003 CGP 11:69981156-69994951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IDA microtubule cytoskeleton organization
GO:0005515 IPI protein binding
GO:0005764 IDA lysosome
GO:0005790 IDA smooth endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005875 IDA microtubule associated complex
GO:0005886 IDA plasma membrane
GO:0006914 IEA autophagy
GO:0008017 IDA microtubule binding
GO:0015629 IDA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302386 GABARAP-001 protein_coding Homo_sapiens 0 479
ENST00000411645 RP11-6B6.3-001 processed_pseudogene Homo_sapiens 0 198
ENST00000570760 CTD-2545G14.7-001 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000570856 GABARAP-006 nonsense_mediated_decay Homo_sapiens 0 296
ENST00000571129 GABARAP-004 protein_coding Homo_sapiens 0 283
ENST00000571253 GABARAP-003 protein_coding Homo_sapiens 2e-33 147
ENST00000573928 GABARAP-002 protein_coding Homo_sapiens 0 353
ENST00000577035 GABARAP-005 protein_coding Homo_sapiens 0 479

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