C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 22 (organic cation transporter), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019044 Slc22a5-001 ENSMUSG00000018900 10090 - 11:53864542-53891660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019044 6.813±1.67 19.922±5.95 13.891±0.27 4.662±0.86 8.823±3.03 10.242±2.36 6.618±1.45 73.318±10.81 4.006±2.78 8.558±0.73 2.124±0.85 11.826±5.78 24.252±11.41 7.540±3.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368
CIL_0000HR CIL_0000HR_0003 CGP 11:53864542-53980332

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006814 IEA sodium ion transport
GO:0007005 IMP mitochondrion organization
GO:0007512 IMP adult heart development
GO:0007626 IMP locomotory behavior
GO:0009437 IMP carnitine metabolic process
GO:0015226 IMP carnitine transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015651 IDA quaternary ammonium group transmembrane transporter activity
GO:0015697 IDA quaternary ammonium group transport
GO:0015879 IMP carnitine transport
GO:0016020 IC membrane
GO:0016021 IEA integral component of membrane
GO:0031526 IDA brush border membrane
GO:0048608 IMP reproductive structure development
GO:1902603 IMP carnitine transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000200652 SLC22A4-001 protein_coding Homo_sapiens 0 959
ENST00000245407 SLC22A5-001 protein_coding Homo_sapiens 0 1901
ENST00000435065 SLC22A5-201 protein_coding Homo_sapiens 0 1434
ENST00000437841 SLC22A5-008 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000447841 SLC22A5-005 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000448810 SLC22A5-002 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000461013 SLC22A5-006 retained_intron Homo_sapiens 0 1310
ENST00000475308 SLC22A5-003 retained_intron Homo_sapiens 0 702
ENST00000479605 SLC22A5-007 processed_transcript Homo_sapiens 0 536

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