C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 22 (organic cation transporter), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136307 Slc22a5-002 ENSMUSG00000018900 10090 - 11:53873679-53891595 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000136307
Transcript ID Testis
ENSMUST00000136307 3.974±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368
CIL_0000HR CIL_0000HR_0003 CGP 11:53864542-53980332

Gene Ontology

GO IDEvidence TypeGO Description
GO:0007005 IMP mitochondrion organization
GO:0007512 IMP adult heart development
GO:0007626 IMP locomotory behavior
GO:0009437 IMP carnitine metabolic process
GO:0015226 IMP carnitine transmembrane transporter activity
GO:0015651 IDA quaternary ammonium group transmembrane transporter activity
GO:0015697 IDA quaternary ammonium group transport
GO:0015879 IMP carnitine transport
GO:0016020 IC membrane
GO:0048608 IMP reproductive structure development
GO:1902603 IMP carnitine transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000200652 SLC22A4-001 protein_coding Homo_sapiens 0 486
ENST00000245407 SLC22A5-001 protein_coding Homo_sapiens 0 460
ENST00000435065 SLC22A5-201 protein_coding Homo_sapiens 0 444
ENST00000437841 SLC22A5-008 nonsense_mediated_decay Homo_sapiens 0 806

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